build based on 1972d03

previews/PR355/chunk_options/index.html

@@ -8,4 +8,4 @@
  ```{julia, echo = false, out_width = &quot;12cm&quot;}</code></pre><h2 id="Weave-Chunk-Options-1"><a class="docs-heading-anchor" href="#Weave-Chunk-Options-1">Weave Chunk Options</a><a class="docs-heading-anchor-permalink" href="#Weave-Chunk-Options-1" title="Permalink"></a></h2><p>Weave currently supports the following chunk options: we&#39;ve mostly followed <a href="http://yihui.name/knitr/options">RMarkdown&#39;s namings</a>, but not all options are implemented.</p><h3 id="Evaluation-1"><a class="docs-heading-anchor" href="#Evaluation-1">Evaluation</a><a class="docs-heading-anchor-permalink" href="#Evaluation-1" title="Permalink"></a></h3><ul><li><code>eval = true</code>: Evaluate the code chunk. If <code>false</code> the chunk won’t be executed.</li><li><code>cache = false</code>: Cache results, depending on <code>cache</code> parameter on <a href="../usage/#Weave.weave"><code>weave</code></a> function.</li><li><code>tangle = true</code>: Set tangle to <code>false</code> to exclude chunk from tangled code.</li></ul><h3 id="Rendering-1"><a class="docs-heading-anchor" href="#Rendering-1">Rendering</a><a class="docs-heading-anchor-permalink" href="#Rendering-1" title="Permalink"></a></h3><ul><li><code>echo = true</code>: Echo the code in the output document. If <code>false</code> the source code will be hidden.</li><li><code>results = &quot;markup&quot;</code>: The output format of the printed results. <code>&quot;markup&quot;</code> for literal block, <code>&quot;hidden&quot;</code> for hidden results, or anything else for raw output (I tend to use <code>&quot;tex&quot;</code> for Latex and <code>&quot;rst&quot;</code> for rest). Raw output is useful if you want to e.g. create tables from code chunks.</li><li><code>term = false</code>: If <code>true</code> the output emulates a REPL session. Otherwise only stdout and figures will be included in output.</li><li><code>wrap = true</code>: Wrap long lines from output.</li><li><code>line_width = 75</code>: Line width for wrapped lines.</li><li><code>hold = false</code>: Hold all results until the end of the chunk.</li></ul><h3 id="Figures-1"><a class="docs-heading-anchor" href="#Figures-1">Figures</a><a class="docs-heading-anchor-permalink" href="#Figures-1" title="Permalink"></a></h3><ul><li><code>label = nothing</code>: Chunk label, will be used for figure labels in Latex as <code>fig:label</code>.</li><li><code>fig_width = 6</code>: Figure width passed to plotting library.</li><li><code>fig_height = 4</code>: Figure height passed to plotting library.</li><li><code>out_width</code>: Width of saved figure in output markup e.g. <code>&quot;50%&quot;</code>, <code>&quot;12cm&quot;</code>, <code>0.5\linewidth</code></li><li><code>out_height</code>: Height of saved figure in output markup</li><li><code>dpi = 96</code>: Resolution of saved figures.</li><li><code>fig_cap</code>: Figure caption.</li><li><code>fig_ext</code>: File extension (format) of saved figures.</li><li><code>fig_pos = &quot;!h&quot;</code>: Figure position in Latex, e.g.: <code>&quot;ht&quot;</code>.</li><li><code>fig_env = &quot;figure&quot;</code>: Figure environment in Latex.</li></ul><h2 id="Default-Chunk-Options-1"><a class="docs-heading-anchor" href="#Default-Chunk-Options-1">Default Chunk Options</a><a class="docs-heading-anchor-permalink" href="#Default-Chunk-Options-1" title="Permalink"></a></h2><p>You can set the default chunk options (and <code>weave</code> arguments) for a document using <code>weave_options</code> key in YAML <a href="../header/#Header-Configuration-1">Header Configuration</a>. E.g. to set the default <code>out_width</code> of all figures you can use:</p><pre><code class="language-yaml">---
 weave_options:
   out_width : 50%
----</code></pre><p>You can also set or change the default chunk options for a document either before weave using the <code>set_chunk_defaults</code> function.</p><article class="docstring"><header><a class="docstring-binding" id="Weave.set_chunk_defaults!" href="#Weave.set_chunk_defaults!"><code>Weave.set_chunk_defaults!</code></a> — <span class="docstring-category">Function</span></header><section><div><pre><code class="language-julia">set_chunk_defaults!(opts::Dict{Symbol, Any})</code></pre><p>Set default options for code chunks, use <a href="#Weave.get_chunk_defaults"><code>get_chunk_defaults</code></a> to see the current values.</p><p>E.g.: set default <code>dpi</code> to <code>200</code> and <code>fig_width</code> to <code>8</code></p><pre><code class="language-julia">julia&gt; set_chunk_defaults!(Dict(:dpi =&gt; 200, :fig_width =&gt; 8))</code></pre></div><a class="docs-sourcelink" target="_blank" href="https://github.com/JunoLab/Weave.jl/blob/21e8e5e6f26ee00c9a9a8db2ba88edc3afb71f78/src/config.jl#L39-L49">source</a></section></article><article class="docstring"><header><a class="docstring-binding" id="Weave.get_chunk_defaults" href="#Weave.get_chunk_defaults"><code>Weave.get_chunk_defaults</code></a> — <span class="docstring-category">Function</span></header><section><div><pre><code class="language-julia">get_chunk_defaults()</code></pre><p>Get default options used for code chunks.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/JunoLab/Weave.jl/blob/21e8e5e6f26ee00c9a9a8db2ba88edc3afb71f78/src/config.jl#L52-L56">source</a></section></article><article class="docstring"><header><a class="docstring-binding" id="Weave.restore_chunk_defaults!" href="#Weave.restore_chunk_defaults!"><code>Weave.restore_chunk_defaults!</code></a> — <span class="docstring-category">Function</span></header><section><div><pre><code class="language-julia">restore_chunk_defaults!()</code></pre><p>Restore Weave.jl default chunk options.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/JunoLab/Weave.jl/blob/21e8e5e6f26ee00c9a9a8db2ba88edc3afb71f78/src/config.jl#L59-L63">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../publish/">« Publishing to HTML and PDF</a><a class="docs-footer-nextpage" href="../header/">Header Configuration »</a></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> on <span class="colophon-date" title="Tuesday 26 May 2020 02:06">Tuesday 26 May 2020</span>. Using Julia version 1.4.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+---</code></pre><p>You can also set or change the default chunk options for a document either before weave using the <code>set_chunk_defaults</code> function.</p><article class="docstring"><header><a class="docstring-binding" id="Weave.set_chunk_defaults!" href="#Weave.set_chunk_defaults!"><code>Weave.set_chunk_defaults!</code></a> — <span class="docstring-category">Function</span></header><section><div><pre><code class="language-julia">set_chunk_defaults!(opts::Dict{Symbol, Any})</code></pre><p>Set default options for code chunks, use <a href="#Weave.get_chunk_defaults"><code>get_chunk_defaults</code></a> to see the current values.</p><p>E.g.: set default <code>dpi</code> to <code>200</code> and <code>fig_width</code> to <code>8</code></p><pre><code class="language-julia">julia&gt; set_chunk_defaults!(Dict(:dpi =&gt; 200, :fig_width =&gt; 8))</code></pre></div><a class="docs-sourcelink" target="_blank" href="https://github.com/JunoLab/Weave.jl/blob/1972d03d1991b8535df0fbd26af674c9599b8ea5/src/config.jl#L39-L49">source</a></section></article><article class="docstring"><header><a class="docstring-binding" id="Weave.get_chunk_defaults" href="#Weave.get_chunk_defaults"><code>Weave.get_chunk_defaults</code></a> — <span class="docstring-category">Function</span></header><section><div><pre><code class="language-julia">get_chunk_defaults()</code></pre><p>Get default options used for code chunks.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/JunoLab/Weave.jl/blob/1972d03d1991b8535df0fbd26af674c9599b8ea5/src/config.jl#L52-L56">source</a></section></article><article class="docstring"><header><a class="docstring-binding" id="Weave.restore_chunk_defaults!" href="#Weave.restore_chunk_defaults!"><code>Weave.restore_chunk_defaults!</code></a> — <span class="docstring-category">Function</span></header><section><div><pre><code class="language-julia">restore_chunk_defaults!()</code></pre><p>Restore Weave.jl default chunk options.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/JunoLab/Weave.jl/blob/1972d03d1991b8535df0fbd26af674c9599b8ea5/src/config.jl#L59-L63">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../publish/">« Publishing to HTML and PDF</a><a class="docs-footer-nextpage" href="../header/">Header Configuration »</a></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> on <span class="colophon-date" title="Saturday 30 May 2020 12:37">Saturday 30 May 2020</span>. Using Julia version 1.4.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

previews/PR355/examples/FIR_design.html

@@ -791,7 +791,7 @@ FIRfreqz (generic function with 2 methods)
         <div class="footer">
           <p>
             Published from <a href="FIR_design.jmd">FIR_design.jmd</a>
-            using <a href="http://github.com/JunoLab/Weave.jl">Weave.jl</a> v0.10.2 on 2020-05-26.
+            using <a href="http://github.com/JunoLab/Weave.jl">Weave.jl</a> v0.10.2 on 2020-05-30.
           </p>
         </div>
       </div>

previews/PR355/examples/FIR_design_plots.html

@@ -797,7 +797,7 @@ FIRfreqz (generic function with 2 methods)
         <div class="footer">
           <p>
             Published from <a href="FIR_design_plots.jl">FIR_design_plots.jl</a>
-            using <a href="http://github.com/JunoLab/Weave.jl">Weave.jl</a> v0.10.2 on 2020-05-26.
+            using <a href="http://github.com/JunoLab/Weave.jl">Weave.jl</a> v0.10.2 on 2020-05-30.
           </p>
         </div>
       </div>

previews/PR355/getting_started/index.html

@@ -10,4 +10,4 @@ weave(filename; doctype = "md2html", out_path = :pwd)
 weave(filename; doctype = "md2pdf", out_path = :pwd)
 
 # Julia markdown to Pandoc markdown
-weave(filename; doctype = &quot;pandoc&quot;, out_path = :pwd)</code></pre><div class="admonition is-category-tips"><header class="admonition-header">Tips</header><div class="admonition-body"><p><code>Weave.EXAMPLE_FOLDER</code> points to <a href="https://github.com/JunoLab/Weave.jl/tree/master/examples">the <code>examples</code> directory</a>.</p></div></div></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Weave.jl - Scientific Reports Using Julia</a><a class="docs-footer-nextpage" href="../usage/">Using Weave »</a></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> on <span class="colophon-date" title="Tuesday 26 May 2020 02:06">Tuesday 26 May 2020</span>. Using Julia version 1.4.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+weave(filename; doctype = &quot;pandoc&quot;, out_path = :pwd)</code></pre><div class="admonition is-category-tips"><header class="admonition-header">Tips</header><div class="admonition-body"><p><code>Weave.EXAMPLE_FOLDER</code> points to <a href="https://github.com/JunoLab/Weave.jl/tree/master/examples">the <code>examples</code> directory</a>.</p></div></div></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« Weave.jl - Scientific Reports Using Julia</a><a class="docs-footer-nextpage" href="../usage/">Using Weave »</a></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> on <span class="colophon-date" title="Saturday 30 May 2020 12:37">Saturday 30 May 2020</span>. Using Julia version 1.4.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

previews/PR355/header/index.html

@@ -27,4 +27,4 @@ weave_options:
   md2pdf:
     out_path : pdf
   fig_ext : .png
----</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../chunk_options/">« Chunk Options</a><a class="docs-footer-nextpage" href="../notebooks/">Working with Jupyter notebooks »</a></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> on <span class="colophon-date" title="Tuesday 26 May 2020 02:06">Tuesday 26 May 2020</span>. Using Julia version 1.4.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+---</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../chunk_options/">« Chunk Options</a><a class="docs-footer-nextpage" href="../notebooks/">Working with Jupyter notebooks »</a></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> on <span class="colophon-date" title="Saturday 30 May 2020 12:37">Saturday 30 May 2020</span>. Using Julia version 1.4.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

previews/PR355/publish/index.html

@@ -6,4 +6,4 @@ date: 15th December 2016
 ---</code></pre><p>Here are sample input and outputs:</p><ul><li>input (Julia markdown format): <a href="../examples/FIR_design_plots.jl"><code>FIR_design_plots.jl</code></a> (its path is bound to <code>Weave.SAMPLE_JL_DOC</code>)</li><li>HTML output: <a href="../examples/FIR_design_plots.html"><code>FIR_design_plots.html</code></a></li><li>PDF output: <a href="../examples/FIR_design_plots.pdf"><code>FIR_design_plots.pdf</code></a></li></ul><p>They are generated as follows:</p><pre><code class="language-julia">weave(Weave.SAMPLE_JL_DOC)) # default to md2html output format
 weave(Weave.SAMPLE_JL_DOC; doctype = &quot;md2pdf&quot;)</code></pre><div class="admonition is-category-tips"><header class="admonition-header">Tips</header><div class="admonition-body"><p><code>Weave.SAMPLE_JL_DOC</code> is the path of <a href="../examples/FIR_design.jl">FIR_design.jl</a>.</p></div></div><div class="admonition is-info"><header class="admonition-header">Note</header><div class="admonition-body"><p><code>&quot;md2html&quot;</code> and <code>&quot;md2pdf&quot;</code> assume Julia markdown format as an input, while <code>pandoc2pdf</code> and <code>pandoc2html</code> assume Noweb input format (i.e. Pandoc markdown).</p></div></div><h2 id="Templates-1"><a class="docs-heading-anchor" href="#Templates-1">Templates</a><a class="docs-heading-anchor-permalink" href="#Templates-1" title="Permalink"></a></h2><p>You can use a custom template with <code>md2html</code> and <code>md2pdf</code> formats with <code>template</code> keyword option, e.g.: <code>weave(&quot;FIR_design_plots.jl&quot;, template = &quot;custom.tpl&quot;</code>.</p><p>As starting point, you can use the existing templates:</p><ul><li>HTML (<code>md2html</code>): <a href="https://github.com/mpastell/Weave.jl/blob/master/templates/md2html.tpl"><code>md2html.tpl</code></a></li><li>LaTex (<code>md2pdf</code>): <a href="https://github.com/mpastell/Weave.jl/blob/master/templates/md2pdf.tpl"><code>md2pdf.tpl</code></a></li></ul><p>Templates are rendered using <a href="https://github.com/jverzani/Mustache.jl">Mustache.jl</a>.</p><h2 id="Supported-Markdown-syntax-1"><a class="docs-heading-anchor" href="#Supported-Markdown-syntax-1">Supported Markdown syntax</a><a class="docs-heading-anchor-permalink" href="#Supported-Markdown-syntax-1" title="Permalink"></a></h2><p>The markdown variant used by Weave is <a href="https://docs.julialang.org/en/v1/stdlib/Markdown/#">Julia markdown</a>. In addition Weave supports few additional Markdown features:</p><h3 id="Comments-1"><a class="docs-heading-anchor" href="#Comments-1">Comments</a><a class="docs-heading-anchor-permalink" href="#Comments-1" title="Permalink"></a></h3><p>You can add comments using html syntax: <code>&lt;!-- --&gt;</code></p><h3 id="Multiline-equations-1"><a class="docs-heading-anchor" href="#Multiline-equations-1">Multiline equations</a><a class="docs-heading-anchor-permalink" href="#Multiline-equations-1" title="Permalink"></a></h3><p>You can add multiline equations using:</p><pre><code class="language-none">$$
 x^2 = x*x
-$$</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../usage/">« Using Weave</a><a class="docs-footer-nextpage" href="../chunk_options/">Chunk Options »</a></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> on <span class="colophon-date" title="Tuesday 26 May 2020 02:06">Tuesday 26 May 2020</span>. Using Julia version 1.4.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+$$</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../usage/">« Using Weave</a><a class="docs-footer-nextpage" href="../chunk_options/">Chunk Options »</a></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> on <span class="colophon-date" title="Saturday 30 May 2020 12:37">Saturday 30 May 2020</span>. Using Julia version 1.4.2.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

previews/PR355/search/index.html

@@ -1,2 +1,2 @@
 <!DOCTYPE html>
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