diff --git a/src/chunks.jl b/src/chunks.jl
index c7ef082..1a5aced 100644
--- a/src/chunks.jl
+++ b/src/chunks.jl
@@ -7,10 +7,11 @@ type WeaveDoc
     cwd::AbstractString
     format
     doctype::AbstractString
+    header_script::String
     function WeaveDoc(source, chunks)
         path, fname = splitdir(abspath(source))
         basename = splitext(fname)[1]
-        new(source, basename, path, chunks, "", nothing, "")
+        new(source, basename, path, chunks, "", nothing, "", "")
     end
 end
 
diff --git a/src/display_methods.jl b/src/display_methods.jl
index a0d9fa5..b8e7116 100644
--- a/src/display_methods.jl
+++ b/src/display_methods.jl
@@ -12,10 +12,11 @@ type Report <: Display
   cur_chunk
   mimetypes::Array{AbstractString}
   first_plot::Bool
+  header_script::String
 end
 
 function Report(cwd, basename, formatdict, mimetypes)
-    Report(cwd, basename, formatdict, "", "", "", 1, AbstractString[], :text, nothing, mimetypes, true)
+    Report(cwd, basename, formatdict, "", "", "", 1, AbstractString[], :text, nothing, mimetypes, true, "")
 end
 
 
diff --git a/src/pandoc.jl b/src/pandoc.jl
index e7d6946..9109453 100644
--- a/src/pandoc.jl
+++ b/src/pandoc.jl
@@ -13,6 +13,16 @@ function pandoc2html(formatted::AbstractString, doc::WeaveDoc, outname::Abstract
   wversion = string(Pkg.installed("Weave"))
   wtime =  string(Date(now()))
 
+  #Header is inserted from displayed plots
+  header_script = doc.header_script
+  #info(doc.header_script)
+
+  if header_script ≠ ""
+    self_contained = []
+  else
+    self_contained = "--self-contained"
+  end
+
   #Change path for pandoc
   old_wd = pwd()
   cd(doc.cwd)
@@ -20,9 +30,10 @@ function pandoc2html(formatted::AbstractString, doc::WeaveDoc, outname::Abstract
   outname = basename(outname)
 
   try
-    pandoc_out, pandoc_in, proc = readandwrite(`pandoc -R -s --mathjax --highlight-style=tango
-    --template $html_template -c $css_template
+    pandoc_out, pandoc_in, proc = readandwrite(`pandoc -R -s --mathjax="" --highlight-style=tango
+    --template $html_template -H $css_template $self_contained
      -V wversion=$wversion -V wtime=$wtime -V wsource=$wsource
+     -V headerscript=$header_script
      -o $outname`)
     println(pandoc_in, formatted)
 
diff --git a/src/plots.jl b/src/plots.jl
index 6bf0215..43d16f3 100644
--- a/src/plots.jl
+++ b/src/plots.jl
@@ -18,14 +18,11 @@ function Base.display(report::Report, m::MIME"image/svg+xml", data::Plots.Plot{P
   start = split(splitted[1], r"(?=<div)")
   #script = lstrip(start[1]) #local
 
-  #TODO insert into header
-  #script = "<script src=\"https://cdn.plot.ly/plotly-latest.min.js\"></script>"
-  script = ""
   div = lstrip(start[2])
   plot = join(map(lstrip, splitted[2:end]), "\n")
 
   if report.first_plot
-    report.rich_output *= "\n" * script
+    report.header_script *= "<script src=\"https://cdn.plot.ly/plotly-latest.min.js\"></script>"
     report.first_plot = false
   end
 
@@ -39,11 +36,10 @@ end
 
 #PNG or SVG is not working, output html
 function Base.display(report::Report, m::MIME"image/svg+xml", plot::Plots.Plot{Plots.PlotlyJSBackend})
-  script = "<script src=\"https://cdn.plot.ly/plotly-latest.min.js\"></script>"
   body = Plots.PlotlyJS.html_body(plot.o.plot)
 
   if report.first_plot
-    report.rich_output *= "\n" * script
+    report.header_script *= "<script src=\"https://cdn.plot.ly/plotly-latest.min.js\"></script>"
     report.first_plot = false
   end
 
@@ -51,15 +47,7 @@ function Base.display(report::Report, m::MIME"image/svg+xml", plot::Plots.Plot{P
 end
 
 function Base.display(report::Report, m::MIME"image/png", plot::Plots.Plot{Plots.PlotlyJSBackend})
-  script = "<script src=\"https://cdn.plot.ly/plotly-latest.min.js\"></script>"
-  body = Plots.PlotlyJS.html_body(plot.o.plot)
-
-  if report.first_plot
-    report.rich_output *= "\n" * script
-    report.first_plot = false
-  end
-
-  report.rich_output *= "\n" * body
+  display(report, MIME("image/svg+xml"), data)
 end
 
 
diff --git a/src/run.jl b/src/run.jl
index 73419ce..e501974 100644
--- a/src/run.jl
+++ b/src/run.jl
@@ -82,6 +82,7 @@ function Base.run(doc::WeaveDoc; doctype = :auto, plotlib=:auto,
         executed = [executed; result_chunks]
     end
 
+    doc.header_script = report.header_script
 
     popdisplay(report)
 
diff --git a/templates/pandoc_skeleton.css b/templates/pandoc_skeleton.css
index a01275f..5f19bc9 100644
--- a/templates/pandoc_skeleton.css
+++ b/templates/pandoc_skeleton.css
@@ -1,21 +1,18 @@
 <style type="text/css">
 @font-face {
-  font-family: 'Raleway';
+  font-family: 'Garamond';
   font-style: normal;
   font-weight: 300;
-  src: local('Raleway Light'), local('Raleway-Light'), url(http://fonts.gstatic.com/s/raleway/v9/-_Ctzj9b56b8RgXW8FArifk_vArhqVIZ0nv9q090hN8.woff2) format('woff2');
 }
 @font-face {
-  font-family: 'Raleway';
+  font-family: 'Garamond';
   font-style: normal;
   font-weight: 400;
-  src: local('Raleway'), url(http://fonts.gstatic.com/s/raleway/v9/0dTEPzkLWceF7z0koJaX1A.woff2) format('woff2');
 }
 @font-face {
-  font-family: 'Raleway';
+  font-family: 'Garamond';
   font-style: normal;
   font-weight: 600;
-  src: local('Raleway SemiBold'), local('Raleway-SemiBold'), url(http://fonts.gstatic.com/s/raleway/v9/xkvoNo9fC8O2RDydKj12b_k_vArhqVIZ0nv9q090hN8.woff2) format('woff2');
 }
 html {
   font-family: sans-serif; /* 1 */
diff --git a/templates/pandoc_skeleton.html b/templates/pandoc_skeleton.html
index 5888706..7aa29dd 100644
--- a/templates/pandoc_skeleton.html
+++ b/templates/pandoc_skeleton.html
@@ -17,11 +17,15 @@ $endif$
 
 <!-- TODO check if math works with plotly  -->
 <!-- Need to load plotly before Mathjax or pandoc equations don't work -->
-
-<script src="https://cdn.plot.ly/plotly-latest.min.js"></script>
+$headerscript$
 
 $if(math)$
-  $math$
+<script type="text/javascript">
+  var fileref=document.createElement('script')
+  fileref.setAttribute("type","text/javascript")
+  fileref.setAttribute("src", "http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML")
+  document.getElementsByTagName("head")[0].appendChild(fileref)
+</script>
 $endif$
 
 $for(header-includes)$