mirror of https://github.com/mpastell/Weave.jl
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Matti Pastell
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div.wy-menu-vertical ul.current li.toctree-l3 a {
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font-weight: bold;
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}
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a.documenter-source {
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float: right;
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}
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.documenter-methodtable pre {
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MathJax.Hub.Config({
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"tex2jax": {
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inlineMath: [['$','$'], ['\\(','\\)']],
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processEscapes: true
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}
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});
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MathJax.Hub.Config({
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config: ["MMLorHTML.js"],
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jax: [
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"input/TeX",
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"output/HTML-CSS",
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"output/NativeMML"
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],
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extensions: [
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"MathMenu.js",
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"MathZoom.js",
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"TeX/AMSmath.js",
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"TeX/AMSsymbols.js",
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"TeX/autobold.js",
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"TeX/autoload-all.js"
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]
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});
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MathJax.Hub.Config({
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TeX: { equationNumbers: { autoNumber: "AMS" } }
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});
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<a id='Chunk-options-1'></a>
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# Chunk options
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I've mostly followed [Knitr](http://yihui.name/knitr/options)'s naming for chunk options, but not all options are implemented.
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Options are separated using ";" and need to be valid Julia expressions. Example: A code chunk that saves and displays a 12 cm wide image and hides the source code:
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```julia
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<<fig_width=5; echo=false >>=
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using Gadfly
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x = linspace(0, 2π, 200)
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plot(x=x, y = sin(x), Geom.line)
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@
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```
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Weave currently supports the following chunk options with the following defaults:
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<a id='Options-for-code-1'></a>
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## Options for code
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* `echo = true`. Echo the code in the output document. If `false` the source code will be hidden.
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* `results = "markup"`. The output format of the printed results. "markup" for literal block, "hidden" for hidden results or anything else for raw output (I tend to use ‘tex’ for Latex and ‘rst’ for rest. Raw output is useful if you wan’t to e.g. create tables from code chunks.
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* `eval = true`. Evaluate the code chunk. If false the chunk won’t be executed.
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* `term=false`. If true the output emulates a REPL session. Otherwise only stdout and figures will be included in output.
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* `label`. Chunk label, will be used for figure labels in Latex as fig:label
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* `wrap = true`. Wrap long lines from output.
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* `line_width = 75`. Line width for wrapped lines.
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* `cache = false`. Cache results, depends on `cache` parameter on `weave` function.
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* `hold = false`. Hold all results until the end of the chunk.
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* `tangle = true`. Set tangle to false to exclude chunk from tangled code.
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<a id='Options-for-figures-1'></a>
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## Options for figures
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* `fig_width`. Figure width defined in markup, default depends on the output format.
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* `out_width`. Width of saved figure.
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* `out_height`. Height of saved figure.
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* `dpi`=96. Resolution of saved figures.
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* `fig_cap`. Figure caption.
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* `label`. Chunk label, will be used for figure labels in Latex as fig:label
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* `fig_ext`. File extension (format) of saved figures.
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* `fig_pos="htpb"`. Figure position in Latex.
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* `fig_env="figure"`. Figure environment in Latex.
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<a id='Set-default-chunk-options-1'></a>
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## Set default chunk options
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You can set or alter the default chunk options for a document either before running weave or inside the weaved document. You can e.g. use a hidden chunk in the beginning of the source document to set the options:
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```julia
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<<echo = false>>=
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import Weave
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Weave.set_chunk_defaults(Dict{Symbol, Any}(
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:out_width => "\\0.5linewidth",
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:results => "tex"
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))
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@
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```
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```
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set_chunk_defaults(opts)
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get_chunk_defaults()
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restore_chunk_defaults()
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```
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<a id='Function-index-1'></a>
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# Function index
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- [`Weave.convert_doc`](notebooks.md#Weave.convert_doc-Tuple{String,String})
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- [`Weave.get_chunk_defaults`](chunk_options.md#Weave.get_chunk_defaults-Tuple{})
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- [`Weave.list_out_formats`](usage.md#Weave.list_out_formats-Tuple{})
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- [`Weave.restore_chunk_defaults`](chunk_options.md#Weave.restore_chunk_defaults-Tuple{})
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- [`Weave.tangle`](usage.md#Weave.tangle-Tuple{Any})
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- [`Weave.weave`](usage.md#Weave.weave-Tuple{Any})
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<a id='Getting-started-1'></a>
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# Getting started
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The best way to get started using Weave.jl is to look at the example input and output documents. Examples for different formats are included in the packages `examples` directory.
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First have a look at source document using markdown code chunks and Gadfly for figures: [gadfly_md_sample.jmd](examples/gadfly_md_sample.jmd) and then see the output in different formats:
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* Pandoc markdown: [gadfly_md_sample.md](examples/gadfly_md_sample.txt)
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* HTML: [gadfly_md_sample.html](examples/gadfly_md_sample.html)
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* pdf: [gadfly_md_sample.pdf](examples/gadfly_md_sample.pdf)
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*Producing HTML and pdf output requires that you have Pandoc and XeLatex (for pdf) installed.*
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You can Weave the files to your working directory using:
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```julia
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using Weave
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#Markdown
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weave(Pkg.dir("Weave","examples","gadfly_md_sample.jmd"), out_path = :pwd,
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doctype = "pandoc")
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#HTML
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weave(Pkg.dir("Weave","examples","gadfly_md_sample.jmd"), out_path = :pwd,
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doctype = "md2html")
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#pdf
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weave(Pkg.dir("Weave","examples","gadfly_md_sample.jmd"), out_path = :pwd,
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doctype = "md2pdf")
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```
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<a id='Intro-1'></a>
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# Intro
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This is the documentation of [Weave.jl](http://github.com/mpastell/weave.jl). Weave is a scientific report generator/literate programming tool for Julia. It resembles [Pweave](http://mpastell.com/pweave), Knitr, rmarkdown and Sweave.
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**Current features**
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* Noweb, markdown or script syntax for input documents.
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* Execute code as terminal or "script" chunks.
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* Capture Plots, Gadfly, PyPlot and Winston figures.
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* Supports LaTex, Pandoc, Github markdown, MultiMarkdown, Asciidoc and reStructuredText output
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* Publish markdown directly to html and pdf using Pandoc.
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* Simple caching of results
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* Convert to and from IJulia notebooks
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<a id='Contents-1'></a>
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## Contents
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- [Getting started](getting_started.md#Getting-started-1)
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- [Using Weave](usage.md#Using-Weave-1)
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- [Weave](usage.md#Weave-1)
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- [Weave from shell](usage.md#Weave-from-shell-1)
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- [Tangle](usage.md#Tangle-1)
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- [Supported formats](usage.md#Supported-formats-1)
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- [Document syntax](usage.md#Document-syntax-1)
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- [Noweb](usage.md#Noweb-1)
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- [Markdown](usage.md#Markdown-1)
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- [Publishing scripts](publish.md#Publishing-scripts-1)
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- [Other mark ups with scripts](publish.md#Other-mark-ups-with-scripts-1)
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- [Chunk options](chunk_options.md#Chunk-options-1)
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- [Options for code](chunk_options.md#Options-for-code-1)
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- [Options for figures](chunk_options.md#Options-for-figures-1)
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- [Set default chunk options](chunk_options.md#Set-default-chunk-options-1)
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- [Working with Jupyter notebooks](notebooks.md#Working-with-Jupyter-notebooks-1)
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- [Weaving](notebooks.md#Weaving-1)
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- [Converting between formats](notebooks.md#Converting-between-formats-1)
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- [Function index](function_index.md#Function-index-1)
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<a id='Working-with-Jupyter-notebooks-1'></a>
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# Working with Jupyter notebooks
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<a id='Weaving-1'></a>
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## Weaving
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Weave supports using Jupyter notebooks as input format, this means you can weave notebooks to any supported formats. You can't use chunk options with notebooks.
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```julia
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weave("notebook.ipynb")
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```
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In order to output notebooks from other formats you need to convert the document to a notebook and run the code using IJulia.
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<a id='Converting-between-formats-1'></a>
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## Converting between formats
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You can convert between all supported input formats using the `convert_doc` function.
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To convert from script to notebook:
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```julia
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convert_doc("examples/FIR_design.jl", "FIR_design.ipynb")
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```
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and from notebooks to markdown use:
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```julia
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convert_doc("FIR_design.ipynb", "FIR_design.jmd")
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```
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<a id='Weave.convert_doc-Tuple{String,String}' href='#Weave.convert_doc-Tuple{String,String}'>#</a>
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**`Weave.convert_doc`** — *Method*.
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`convert_doc(infile::AbstractString, outfile::AbstractString; format = nothing)`
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Convert Weave documents between different formats
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* `infile` = Name of the input document
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* `outfile` = Name of the output document
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* `format` = Output format (optional). Detected from outfile extension, but can be set to `"script"`, `"markdown"`, `"notebook"` or `"noweb"`.
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<a id='Publishing-scripts-1'></a>
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# Publishing scripts
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You can also also publish html and pdf documents from Julia scripts with a specific format. Producing HTML and pdf output requires that you have Pandoc and XeLatex (for pdf) installed and in your path.
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|
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These scripts can be executed normally using Julia or published with Weave. Documentation is written in markdown in lines starting with `#'`, `#%%` or `# %%`, and code is executed and results are included in the published document.
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The format is identical to [Pweave](http://mpastell.com/pweave/pypublish.html) and the concept is similar to publishing documents with MATLAB or using Knitr's [spin](http://yihui.name/knitr/demo/stitch/). Weave will remove the first empty space from each line of documentation.
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All lines that are not documentation are treated as code. You can set chunk options using lines starting with `#+` just before code e.g. `#+ term=true`. See the example below for the markup.
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[FIR_design.jl](examples/FIR_design.jl), [FIR_design.html](examples/FIR_design.html) , [FIR_design.pdf](examples/FIR_design.pdf).
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```julia
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weave("FIR_design.jl")
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weave("FIR_design.jl", docformat = "md2pdf")
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```
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<a id='Other-mark-ups-with-scripts-1'></a>
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## Other mark ups with scripts
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You can also use any Weave supported format in the comments and set the output format as you would for noweb and markdown inputs. e.g for LaTeX you can use:
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```julia
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weave("latex_doc.jl", docformat = "texminted")
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```
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<a id='Using-Weave-1'></a>
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# Using Weave
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You can write your documentation and code in input document using Noweb or Markdown syntax and use `weave` function to execute to document to capture results and figures.
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<a id='Weave-1'></a>
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## Weave
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Weave document with markup and julia code using Gadfly for plots, `out_path = :pwd` makes the results appear in the current working directory.
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```julia
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using Weave
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weave(Pkg.dir("Weave","examples","gadfly_sample.mdw"), out_path = :pwd)
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```
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Using PyPlot:
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```julia
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weave(Pkg.dir("Weave","examples","julia_sample.mdw"), plotlib="PyPlot", out_path = :pwd)
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```
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<a id='Weave.weave-Tuple{Any}' href='#Weave.weave-Tuple{Any}'>#</a>
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**`Weave.weave`** — *Method*.
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`function weave(source ; doctype = :auto, plotlib="Gadfly", informat=:auto, out_path=:doc, fig_path = "figures", fig_ext = nothing, cache_path = "cache", cache=:off)`
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Weave an input document to output file.
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* `doctype`: :auto = set based on file extension or specify one of the supported formats. See `list_out_formats()`
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* `plotlib`: `"PyPlot"`, `"Gadfly"` or `nothing`
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* `informat`: :auto = set based on file extension or set to `"noweb"`, `"markdown"` or `script`
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* `out_path`: Path where the output is generated. Can be: `:doc`: Path of the source document, `:pwd`: Julia working directory, `"somepath"`: output directory as a String e.g `"/home/mpastell/weaveout"` or filename as string e.g. ~/outpath/outfile.tex.
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* `fig_path`: where figures will be generated, relative to out_path
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* `fig_ext`: Extension for saved figures e.g. `".pdf"`, `".png"`. Default setting depends on `doctype`.
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* `cache_path`: where of cached output will be saved.
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* `cache`: controls caching of code: `:off` = no caching, `:all` = cache everything, `:user` = cache based on chunk options, `:refresh`, run all code chunks and save new cache.
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**Note:** Run Weave from terminal and not using IJulia, Juno or ESS, they tend to mess with capturing output.
|
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<a id='Weave-from-shell-1'></a>
|
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## Weave from shell
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||||
|
||||
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||||
You can also use the `weave.jl` script under bin directory to weave documents from the shell:
|
||||
|
||||
|
||||
```
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$ ./weave.jl
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usage: weave.jl [--doctype DOCTYPE] [--plotlib PLOTLIB]
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[--informat INFORMAT] [--out_path OUT_PATH]
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||||
[--fig_path FIG_PATH] [--fig_ext FIG_EXT] source...
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||||
```
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<a id='Tangle-1'></a>
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||||
|
||||
## Tangle
|
||||
|
||||
|
||||
Tangling extracts the code from document:
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||||
|
||||
<a id='Weave.tangle-Tuple{Any}' href='#Weave.tangle-Tuple{Any}'>#</a>
|
||||
**`Weave.tangle`** — *Method*.
|
||||
|
||||
|
||||
|
||||
`tangle(source ; out_path=:doc, informat="noweb")`
|
||||
|
||||
Tangle source code from input document to .jl file.
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||||
|
||||
* `informat`: `"noweb"` of `"markdown"`
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* `out_path`: Path where the output is generated. Can be: `:doc`: Path of the source document, `:pwd`: Julia working directory, `"somepath"`, directory name as a string e.g `"/home/mpastell/weaveout"`
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|
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or filename as string e.g. ~/outpath/outfile.jl.
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||||
|
||||
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||||
<a id='Supported-formats-1'></a>
|
||||
|
||||
## Supported formats
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||||
|
||||
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||||
Weave sets the output format based on the file extension, but you can also set it using `doctype` option. The rules for detecting the format are:
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||||
|
||||
|
||||
```julia
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ext == ".jl" && return "md2html"
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contains(ext, ".md") && return "md2html"
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contains(ext, ".rst") && return "rst"
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contains(ext, ".tex") && return "texminted"
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contains(ext, ".txt") && return "asciidoc"
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return "pandoc"
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```
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You can get a list of supported output formats:
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||||
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```julia
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julia> list_out_formats()
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pandoc: Pandoc markdown
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rst: reStructuredText and Sphinx
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texminted: Latex using minted for highlighting
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github: Github markdown
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md2html: Markdown to HTML (requires Pandoc)
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md2pdf: Markdown to pdf (requires Pandoc and xelatex)
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asciidoc: AsciiDoc
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tex: Latex with custom code environments
|
||||
```
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|
||||
<a id='Weave.list_out_formats-Tuple{}' href='#Weave.list_out_formats-Tuple{}'>#</a>
|
||||
**`Weave.list_out_formats`** — *Method*.
|
||||
|
||||
|
||||
|
||||
`list_out_formats()`
|
||||
|
||||
List supported output formats
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||||
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||||
|
||||
<a id='Document-syntax-1'></a>
|
||||
|
||||
## Document syntax
|
||||
|
||||
|
||||
Weave uses noweb, markdown or script syntax for defining the code chunks and documentation chunks. You can also weave Jupyter notebooks. The format is detected based on the file extension, but you can also set it manually using the `informat` parameter.
|
||||
|
||||
|
||||
The rules for autodetection are:
|
||||
|
||||
|
||||
```julia
|
||||
ext == ".jl" && return "script"
|
||||
ext == ".jmd" && return "markdown"
|
||||
ext == ".ipynb" && return "notebook"
|
||||
return "noweb"
|
||||
```
|
||||
|
||||
|
||||
<a id='Noweb-1'></a>
|
||||
|
||||
## Noweb
|
||||
|
||||
|
||||
<a id='Code-chunks-1'></a>
|
||||
|
||||
### Code chunks
|
||||
|
||||
|
||||
start with a line marked with `<<>>=` or `<<options>>=` and end with line marked with `@`. The code between the start and end markers is executed and the output is captured to the output document. See for options below.
|
||||
|
||||
|
||||
<a id='Documentation-chunks-1'></a>
|
||||
|
||||
### Documentation chunks
|
||||
|
||||
|
||||
Are the rest of the document (between `@` and `<<>>=` lines and the first chunk be default) and can be written with several different markup languages.
|
||||
|
||||
|
||||
[Sample document]( https://github.com/mpastell/Weave.jl/blob/master/examples/julia_sample.mdw)
|
||||
|
||||
|
||||
<a id='Markdown-1'></a>
|
||||
|
||||
## Markdown
|
||||
|
||||
|
||||
Markdown code chunks are defined using fenced code blocks. [See sample document:](https://github.com/mpastell/Weave.jl/blob/master/examples/gadfly_md_sample.jmd)
|
||||
|
||||
|
|
@ -0,0 +1,18 @@
|
|||
div.wy-menu-vertical ul.current li.toctree-l3 a {
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
a.documenter-source {
|
||||
float: right;
|
||||
}
|
||||
|
||||
.documenter-methodtable pre {
|
||||
margin-left: 0px;
|
||||
margin-right: 0px;
|
||||
margin-top: 0px;
|
||||
padding: 0px;
|
||||
}
|
||||
|
||||
.documenter-methodtable pre.documenter-inline {
|
||||
display: inline;
|
||||
}
|
||||
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|
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||||
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|
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<metadata>Generated by IcoMoon</metadata>
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<font-face units-per-em="1024" ascent="960" descent="-64" />
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<glyph unicode="" glyph-name="arrow-back" d="M853.333 469.334h-519.253l238.293 238.293-60.373 60.373-341.333-341.333 341.333-341.333 60.373 60.373-238.293 238.293h519.253v85.333z" />
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<glyph unicode="" glyph-name="close" d="M810.667 664.96l-60.373 60.373-238.293-238.293-238.293 238.293-60.373-60.373 238.293-238.293-238.293-238.293 60.373-60.373 238.293 238.293 238.293-238.293 60.373 60.373-238.293 238.293z" />
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|
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|
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|
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|
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|
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|
||||
MathJax.Hub.Config({
|
||||
config: ["MMLorHTML.js"],
|
||||
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|
||||
"input/TeX",
|
||||
"output/HTML-CSS",
|
||||
"output/NativeMML"
|
||||
],
|
||||
extensions: [
|
||||
"MathMenu.js",
|
||||
"MathZoom.js",
|
||||
"TeX/AMSmath.js",
|
||||
"TeX/AMSsymbols.js",
|
||||
"TeX/autobold.js",
|
||||
"TeX/autoload-all.js"
|
||||
]
|
||||
});
|
||||
MathJax.Hub.Config({
|
||||
TeX: { equationNumbers: { autoNumber: "AMS" } }
|
||||
});
|
||||
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|
@ -0,0 +1,401 @@
|
|||
<!DOCTYPE html>
|
||||
<!--[if lt IE 7 ]><html class="no-js ie6"><![endif]-->
|
||||
<!--[if IE 7 ]><html class="no-js ie7"><![endif]-->
|
||||
<!--[if IE 8 ]><html class="no-js ie8"><![endif]-->
|
||||
<!--[if IE 9 ]><html class="no-js ie9"><![endif]-->
|
||||
<!--[if (gt IE 9)|!(IE)]><!--> <html class="no-js"> <!--<![endif]-->
|
||||
<head>
|
||||
<meta charset="utf-8">
|
||||
<meta name="viewport" content="width=device-width,user-scalable=no,initial-scale=1,maximum-scale=1">
|
||||
|
||||
|
||||
<title>Chunk options - Weave.jl - Scientific Reports Using Julia</title>
|
||||
|
||||
|
||||
|
||||
|
||||
<meta name="author" content="Matti Pastell">
|
||||
|
||||
|
||||
<meta property="og:url" content="None">
|
||||
<meta property="og:title" content="Weave.jl - Scientific Reports Using Julia">
|
||||
<meta property="og:image" content="None/../">
|
||||
<meta name="apple-mobile-web-app-title" content="Weave.jl - Scientific Reports Using Julia">
|
||||
<meta name="apple-mobile-web-app-capable" content="yes">
|
||||
<meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
|
||||
|
||||
|
||||
<link rel="shortcut icon" type="image/x-icon" href="../assets/images/favicon-e565ddfa3b.ico">
|
||||
<link rel="icon" type="image/x-icon" href="../assets/images/favicon-e565ddfa3b.ico">
|
||||
<style>
|
||||
@font-face {
|
||||
font-family: 'Icon';
|
||||
src: url('../assets/fonts/icon.eot?52m981');
|
||||
src: url('../assets/fonts/icon.eot?#iefix52m981')
|
||||
format('embedded-opentype'),
|
||||
url('../assets/fonts/icon.woff?52m981')
|
||||
format('woff'),
|
||||
url('../assets/fonts/icon.ttf?52m981')
|
||||
format('truetype'),
|
||||
url('../assets/fonts/icon.svg?52m981#icon')
|
||||
format('svg');
|
||||
font-weight: normal;
|
||||
font-style: normal;
|
||||
}
|
||||
</style>
|
||||
<link rel="stylesheet" href="../assets/stylesheets/application-a422ff04cc.css">
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Ubuntu:400,700|Ubuntu+Mono">
|
||||
<style>
|
||||
body, input {
|
||||
font-family: 'Ubuntu', Helvetica, Arial, sans-serif;
|
||||
}
|
||||
pre, code {
|
||||
font-family: 'Ubuntu Mono', 'Courier New', 'Courier', monospace;
|
||||
}
|
||||
</style>
|
||||
|
||||
|
||||
<link rel="stylesheet" href="../assets/Documenter.css">
|
||||
|
||||
<script src="../assets/javascripts/modernizr-4ab42b99fd.js"></script>
|
||||
|
||||
</head>
|
||||
|
||||
|
||||
|
||||
<body class=" ">
|
||||
|
||||
|
||||
|
||||
|
||||
<div class="backdrop">
|
||||
<div class="backdrop-paper"></div>
|
||||
</div>
|
||||
<input class="toggle" type="checkbox" id="toggle-drawer">
|
||||
<input class="toggle" type="checkbox" id="toggle-search">
|
||||
<label class="toggle-button overlay" for="toggle-drawer"></label>
|
||||
<header class="header">
|
||||
<nav aria-label="Header">
|
||||
<div class="bar default">
|
||||
<div class="button button-menu" role="button" aria-label="Menu">
|
||||
<label class="toggle-button icon icon-menu" for="toggle-drawer">
|
||||
<span></span>
|
||||
</label>
|
||||
</div>
|
||||
<div class="stretch">
|
||||
<div class="title">
|
||||
|
||||
<span class="path">
|
||||
|
||||
</span>
|
||||
|
||||
Chunk options
|
||||
</div>
|
||||
</div>
|
||||
|
||||
|
||||
<div class="button button-search" role="button" aria-label="Search">
|
||||
<label class="toggle-button icon icon-search" title="Search" for="toggle-search"></label>
|
||||
</div>
|
||||
</div>
|
||||
<div class="bar search">
|
||||
<div class="button button-close" role="button" aria-label="Close">
|
||||
<label class="toggle-button icon icon-back" for="toggle-search"></label>
|
||||
</div>
|
||||
<div class="stretch">
|
||||
<div class="field">
|
||||
<input class="query" type="text" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck>
|
||||
</div>
|
||||
</div>
|
||||
<div class="button button-reset" role="button" aria-label="Search">
|
||||
<button class="toggle-button icon icon-close" id="reset-search"></button>
|
||||
</div>
|
||||
</div>
|
||||
</nav>
|
||||
</header>
|
||||
<main class="main">
|
||||
|
||||
<div class="drawer">
|
||||
<nav aria-label="Navigation">
|
||||
|
||||
<a href="https://github.com/mpastell/Weave.jl" class="project">
|
||||
<div class="banner">
|
||||
|
||||
<div class="name">
|
||||
<strong>
|
||||
Weave.jl - Scientific Reports Using Julia
|
||||
<span class="version">
|
||||
|
||||
</span>
|
||||
</strong>
|
||||
|
||||
<br>
|
||||
mpastell/Weave.jl
|
||||
|
||||
</div>
|
||||
</div>
|
||||
</a>
|
||||
<div class="scrollable">
|
||||
<div class="wrapper">
|
||||
|
||||
<ul class="repo">
|
||||
<li class="repo-download">
|
||||
|
||||
<a href="https://github.com/mpastell/Weave.jl/archive/master.zip" target="_blank" title="Download" data-action="download">
|
||||
<i class="icon icon-download"></i> Download
|
||||
</a>
|
||||
</li>
|
||||
<li class="repo-stars">
|
||||
<a href="https://github.com/mpastell/Weave.jl/stargazers" target="_blank" title="Stargazers" data-action="star">
|
||||
<i class="icon icon-star"></i> Stars
|
||||
<span class="count">–</span>
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
<hr>
|
||||
|
||||
<div class="toc">
|
||||
<ul>
|
||||
|
||||
|
||||
<li>
|
||||
<a class="" title="Home" href="..">
|
||||
Home
|
||||
</a>
|
||||
|
||||
</li>
|
||||
|
||||
|
||||
|
||||
<li>
|
||||
<a class="" title="Getting started" href="../getting_started/">
|
||||
Getting started
|
||||
</a>
|
||||
|
||||
</li>
|
||||
|
||||
|
||||
|
||||
<li>
|
||||
<a class="" title="Using Weave" href="../usage/">
|
||||
Using Weave
|
||||
</a>
|
||||
|
||||
</li>
|
||||
|
||||
|
||||
|
||||
<li>
|
||||
<a class="" title="Publishing scripts" href="../publish/">
|
||||
Publishing scripts
|
||||
</a>
|
||||
|
||||
</li>
|
||||
|
||||
|
||||
|
||||
<li>
|
||||
<a class="current" title="Chunk options" href="./">
|
||||
Chunk options
|
||||
</a>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<ul>
|
||||
|
||||
<li class="anchor">
|
||||
<a title="Options for code" href="#options-for-code">
|
||||
Options for code
|
||||
</a>
|
||||
</li>
|
||||
|
||||
<li class="anchor">
|
||||
<a title="Options for figures" href="#options-for-figures">
|
||||
Options for figures
|
||||
</a>
|
||||
</li>
|
||||
|
||||
<li class="anchor">
|
||||
<a title="Set default chunk options" href="#set-default-chunk-options">
|
||||
Set default chunk options
|
||||
</a>
|
||||
</li>
|
||||
|
||||
</ul>
|
||||
|
||||
|
||||
</li>
|
||||
|
||||
|
||||
|
||||
<li>
|
||||
<a class="" title="Working with Jupyter notebooks" href="../notebooks/">
|
||||
Working with Jupyter notebooks
|
||||
</a>
|
||||
|
||||
</li>
|
||||
|
||||
|
||||
|
||||
<li>
|
||||
<a class="" title="Function index" href="../function_index/">
|
||||
Function index
|
||||
</a>
|
||||
|
||||
</li>
|
||||
|
||||
|
||||
</ul>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</nav>
|
||||
</div>
|
||||
<article class="article">
|
||||
<div class="wrapper">
|
||||
|
||||
<p><a id='Chunk-options-1'></a></p>
|
||||
<h1 id="chunk-options">Chunk options</h1>
|
||||
<p>I've mostly followed <a href="http://yihui.name/knitr/options">Knitr</a>'s naming for chunk options, but not all options are implemented.</p>
|
||||
<p>Options are separated using ";" and need to be valid Julia expressions. Example: A code chunk that saves and displays a 12 cm wide image and hides the source code:</p>
|
||||
<div class="code"><pre><span></span><span class="o"><<</span><span class="n">fig_width</span><span class="o">=</span><span class="mi">5</span><span class="p">;</span> <span class="n">echo</span><span class="o">=</span><span class="n">false</span> <span class="o">>>=</span>
|
||||
<span class="k">using</span> <span class="n">Gadfly</span>
|
||||
<span class="n">x</span> <span class="o">=</span> <span class="n">linspace</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="mi">2</span><span class="n">π</span><span class="p">,</span> <span class="mi">200</span><span class="p">)</span>
|
||||
<span class="n">plot</span><span class="p">(</span><span class="n">x</span><span class="o">=</span><span class="n">x</span><span class="p">,</span> <span class="n">y</span> <span class="o">=</span> <span class="n">sin</span><span class="p">(</span><span class="n">x</span><span class="p">),</span> <span class="n">Geom</span><span class="o">.</span><span class="n">line</span><span class="p">)</span>
|
||||
<span class="p">@</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p>Weave currently supports the following chunk options with the following defaults:</p>
|
||||
<p><a id='Options-for-code-1'></a></p>
|
||||
<h2 id="options-for-code">Options for code</h2>
|
||||
<ul>
|
||||
<li><code>echo = true</code>. Echo the code in the output document. If <code>false</code> the source code will be hidden.</li>
|
||||
<li><code>results = "markup"</code>. The output format of the printed results. "markup" for literal block, "hidden" for hidden results or anything else for raw output (I tend to use ‘tex’ for Latex and ‘rst’ for rest. Raw output is useful if you wan’t to e.g. create tables from code chunks.</li>
|
||||
<li><code>eval = true</code>. Evaluate the code chunk. If false the chunk won’t be executed.</li>
|
||||
<li><code>term=false</code>. If true the output emulates a REPL session. Otherwise only stdout and figures will be included in output.</li>
|
||||
<li><code>label</code>. Chunk label, will be used for figure labels in Latex as fig:label</li>
|
||||
<li><code>wrap = true</code>. Wrap long lines from output.</li>
|
||||
<li><code>line_width = 75</code>. Line width for wrapped lines.</li>
|
||||
<li><code>cache = false</code>. Cache results, depends on <code>cache</code> parameter on <code>weave</code> function.</li>
|
||||
<li><code>hold = false</code>. Hold all results until the end of the chunk.</li>
|
||||
<li><code>tangle = true</code>. Set tangle to false to exclude chunk from tangled code.</li>
|
||||
</ul>
|
||||
<p><a id='Options-for-figures-1'></a></p>
|
||||
<h2 id="options-for-figures">Options for figures</h2>
|
||||
<ul>
|
||||
<li><code>fig_width</code>. Figure width defined in markup, default depends on the output format.</li>
|
||||
<li><code>out_width</code>. Width of saved figure.</li>
|
||||
<li><code>out_height</code>. Height of saved figure.</li>
|
||||
<li><code>dpi</code>=96. Resolution of saved figures.</li>
|
||||
<li><code>fig_cap</code>. Figure caption.</li>
|
||||
<li><code>label</code>. Chunk label, will be used for figure labels in Latex as fig:label</li>
|
||||
<li><code>fig_ext</code>. File extension (format) of saved figures.</li>
|
||||
<li><code>fig_pos="htpb"</code>. Figure position in Latex.</li>
|
||||
<li><code>fig_env="figure"</code>. Figure environment in Latex.</li>
|
||||
</ul>
|
||||
<p><a id='Set-default-chunk-options-1'></a></p>
|
||||
<h2 id="set-default-chunk-options">Set default chunk options</h2>
|
||||
<p>You can set or alter the default chunk options for a document either before running weave or inside the weaved document. You can e.g. use a hidden chunk in the beginning of the source document to set the options:</p>
|
||||
<div class="code"><pre><span></span><span class="o"><<</span><span class="n">echo</span> <span class="o">=</span> <span class="n">false</span><span class="o">>>=</span>
|
||||
<span class="k">import</span> <span class="n">Weave</span>
|
||||
<span class="n">Weave</span><span class="o">.</span><span class="n">set_chunk_defaults</span><span class="p">(</span><span class="n">Dict</span><span class="p">{</span><span class="n">Symbol</span><span class="p">,</span> <span class="kt">Any</span><span class="p">}(</span>
|
||||
<span class="p">:</span><span class="n">out_width</span> <span class="o">=></span> <span class="s">"</span><span class="se">\\</span><span class="s">0.5linewidth"</span><span class="p">,</span>
|
||||
<span class="p">:</span><span class="n">results</span> <span class="o">=></span> <span class="s">"tex"</span>
|
||||
<span class="p">))</span>
|
||||
<span class="p">@</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<div class="code"><pre><span></span>set_chunk_defaults(opts)
|
||||
get_chunk_defaults()
|
||||
restore_chunk_defaults()
|
||||
</pre></div>
|
||||
<aside class="copyright" role="note">
|
||||
|
||||
Matti Pastell 2016 –
|
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|
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Documentation built with
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|
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||||
<p><a id='Function-index-1'></a></p>
|
||||
<h1 id="function-index">Function index</h1>
|
||||
<ul>
|
||||
<li><a href="../notebooks/#Weave.convert_doc-Tuple{String,String}"><code>Weave.convert_doc</code></a></li>
|
||||
<li><a href="../chunk_options/#Weave.get_chunk_defaults-Tuple{}"><code>Weave.get_chunk_defaults</code></a></li>
|
||||
<li><a href="../usage/#Weave.list_out_formats-Tuple{}"><code>Weave.list_out_formats</code></a></li>
|
||||
<li><a href="../chunk_options/#Weave.restore_chunk_defaults-Tuple{}"><code>Weave.restore_chunk_defaults</code></a></li>
|
||||
<li><a href="../usage/#Weave.tangle-Tuple{Any}"><code>Weave.tangle</code></a></li>
|
||||
<li><a href="../usage/#Weave.weave-Tuple{Any}"><code>Weave.weave</code></a></li>
|
||||
</ul>
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||||
Matti Pastell 2016 –
|
||||
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||||
Documentation built with
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||||
<a href="http://www.mkdocs.org" target="_blank">MkDocs</a>
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using the
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<p><a id='Getting-started-1'></a></p>
|
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<h1 id="getting-started">Getting started</h1>
|
||||
<p>The best way to get started using Weave.jl is to look at the example input and output documents. Examples for different formats are included in the packages <code>examples</code> directory.</p>
|
||||
<p>First have a look at source document using markdown code chunks and Gadfly for figures: <a href="../examples/gadfly_md_sample.jmd">gadfly_md_sample.jmd</a> and then see the output in different formats:</p>
|
||||
<ul>
|
||||
<li>Pandoc markdown: <a href="../examples/gadfly_md_sample.txt">gadfly_md_sample.md</a></li>
|
||||
<li>HTML: <a href="../examples/gadfly_md_sample.html">gadfly_md_sample.html</a></li>
|
||||
<li>pdf: <a href="../examples/gadfly_md_sample.pdf">gadfly_md_sample.pdf</a></li>
|
||||
</ul>
|
||||
<p><em>Producing HTML and pdf output requires that you have Pandoc and XeLatex (for pdf) installed.</em></p>
|
||||
<p>You can Weave the files to your working directory using:</p>
|
||||
<div class="code"><pre><span></span><span class="k">using</span> <span class="n">Weave</span>
|
||||
<span class="c">#Markdown</span>
|
||||
<span class="n">weave</span><span class="p">(</span><span class="n">Pkg</span><span class="o">.</span><span class="n">dir</span><span class="p">(</span><span class="s">"Weave"</span><span class="p">,</span><span class="s">"examples"</span><span class="p">,</span><span class="s">"gadfly_md_sample.jmd"</span><span class="p">),</span> <span class="n">out_path</span> <span class="o">=</span> <span class="p">:</span><span class="n">pwd</span><span class="p">,</span>
|
||||
<span class="n">doctype</span> <span class="o">=</span> <span class="s">"pandoc"</span><span class="p">)</span>
|
||||
<span class="c">#HTML</span>
|
||||
<span class="n">weave</span><span class="p">(</span><span class="n">Pkg</span><span class="o">.</span><span class="n">dir</span><span class="p">(</span><span class="s">"Weave"</span><span class="p">,</span><span class="s">"examples"</span><span class="p">,</span><span class="s">"gadfly_md_sample.jmd"</span><span class="p">),</span> <span class="n">out_path</span> <span class="o">=</span> <span class="p">:</span><span class="n">pwd</span><span class="p">,</span>
|
||||
<span class="n">doctype</span> <span class="o">=</span> <span class="s">"md2html"</span><span class="p">)</span>
|
||||
<span class="c">#pdf</span>
|
||||
<span class="n">weave</span><span class="p">(</span><span class="n">Pkg</span><span class="o">.</span><span class="n">dir</span><span class="p">(</span><span class="s">"Weave"</span><span class="p">,</span><span class="s">"examples"</span><span class="p">,</span><span class="s">"gadfly_md_sample.jmd"</span><span class="p">),</span> <span class="n">out_path</span> <span class="o">=</span> <span class="p">:</span><span class="n">pwd</span><span class="p">,</span>
|
||||
<span class="n">doctype</span> <span class="o">=</span> <span class="s">"md2pdf"</span><span class="p">)</span>
|
||||
</pre></div>
|
||||
<aside class="copyright" role="note">
|
||||
|
||||
Matti Pastell 2016 –
|
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||||
Documentation built with
|
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using the
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<h1 id="intro">Intro</h1>
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<p>This is the documentation of <a href="http://github.com/mpastell/weave.jl">Weave.jl</a>. Weave is a scientific report generator/literate programming tool for Julia. It resembles <a href="http://mpastell.com/pweave">Pweave</a>, Knitr, rmarkdown and Sweave.</p>
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<p><strong>Current features</strong></p>
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<li>Noweb, markdown or script syntax for input documents.</li>
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|
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<li><a href="getting_started/#Getting-started-1">Getting started</a></li>
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<li><a href="usage/#Using-Weave-1">Using Weave</a><ul>
|
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<li><a href="usage/#Weave-1">Weave</a></li>
|
||||
<li><a href="usage/#Weave-from-shell-1">Weave from shell</a></li>
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<li><a href="usage/#Tangle-1">Tangle</a></li>
|
||||
<li><a href="usage/#Supported-formats-1">Supported formats</a></li>
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||||
<li><a href="usage/#Document-syntax-1">Document syntax</a></li>
|
||||
<li><a href="usage/#Noweb-1">Noweb</a></li>
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<li><a href="chunk_options/#Options-for-figures-1">Options for figures</a></li>
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<li><a href="chunk_options/#Set-default-chunk-options-1">Set default chunk options</a></li>
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<li><a href="notebooks/#Working-with-Jupyter-notebooks-1">Working with Jupyter notebooks</a><ul>
|
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<li><a href="notebooks/#Weaving-1">Weaving</a></li>
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<li><a href="notebooks/#Converting-between-formats-1">Converting between formats</a></li>
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<aside class="copyright" role="note">
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Matti Pastell 2016 –
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Documentation built with
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<a href="http://www.mkdocs.org" target="_blank">MkDocs</a>
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using the
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||||
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q;e.enableBuildCallback&&(d&&G(d))&&(d.__requireJsBuild=!0);if("string"===typeof c){if(G(d))return w(C("requireargs","Invalid require call"),m);if(a&&t(L,c))return L[c](h[a.id]);if(g.get)return g.get(i,c,a,j);n=p(c,a,!1,!0);n=n.id;return!t(r,n)?w(C("notloaded",'Module name "'+n+'" has not been loaded yet for context: '+b+(a?"":". Use require([])"))):r[n]}J();i.nextTick(function(){J();q=s(p(null,a));q.skipMap=e.skipMap;q.init(c,d,m,{enabled:!0});D()});return j}e=e||{};U(j,{isBrowser:z,toUrl:function(b){var d,
|
||||
e=b.lastIndexOf("."),k=b.split("/")[0];if(-1!==e&&(!("."===k||".."===k)||1<e))d=b.substring(e,b.length),b=b.substring(0,e);return i.nameToUrl(c(b,a&&a.id,!0),d,!0)},defined:function(b){return t(r,p(b,a,!1,!0).id)},specified:function(b){b=p(b,a,!1,!0).id;return t(r,b)||t(h,b)}});a||(j.undef=function(b){x();var c=p(b,a,!0),e=m(h,b);d(b);delete r[b];delete S[c.url];delete $[b];T(A,function(a,c){a[0]===b&&A.splice(c,1)});e&&(e.events.defined&&($[b]=e.events),y(b))});return j},enable:function(a){m(h,a.id)&&
|
||||
s(a).enable()},completeLoad:function(a){var b,c,d=m(j.shim,a)||{},g=d.exports;for(x();A.length;){c=A.shift();if(null===c[0]){c[0]=a;if(b)break;b=!0}else c[0]===a&&(b=!0);E(c)}c=m(h,a);if(!b&&!t(r,a)&&c&&!c.inited){if(j.enforceDefine&&(!g||!da(g)))return e(a)?void 0:w(C("nodefine","No define call for "+a,null,[a]));E([a,d.deps||[],d.exportsFn])}D()},nameToUrl:function(a,b,c){var d,e,h;(d=m(j.pkgs,a))&&(a=d);if(d=m(aa,a))return i.nameToUrl(d,b,c);if(g.jsExtRegExp.test(a))d=a+(b||"");else{d=j.paths;
|
||||
a=a.split("/");for(e=a.length;0<e;e-=1)if(h=a.slice(0,e).join("/"),h=m(d,h)){H(h)&&(h=h[0]);a.splice(0,e,h);break}d=a.join("/");d+=b||(/^data\:|\?/.test(d)||c?"":".js");d=("/"===d.charAt(0)||d.match(/^[\w\+\.\-]+:/)?"":j.baseUrl)+d}return j.urlArgs?d+((-1===d.indexOf("?")?"?":"&")+j.urlArgs):d},load:function(a,b){g.load(i,a,b)},execCb:function(a,b,c,d){return b.apply(d,c)},onScriptLoad:function(a){if("load"===a.type||ja.test((a.currentTarget||a.srcElement).readyState))N=null,a=I(a),i.completeLoad(a.id)},
|
||||
onScriptError:function(a){var b=I(a);if(!e(b.id))return w(C("scripterror","Script error for: "+b.id,a,[b.id]))}};i.require=i.makeRequire();return i}var g,x,y,D,I,E,N,J,s,O,ka=/(\/\*([\s\S]*?)\*\/|([^:]|^)\/\/(.*)$)/mg,la=/[^.]\s*require\s*\(\s*["']([^'"\s]+)["']\s*\)/g,Q=/\.js$/,ia=/^\.\//;x=Object.prototype;var K=x.toString,fa=x.hasOwnProperty,ha=Array.prototype.splice,z=!!("undefined"!==typeof window&&"undefined"!==typeof navigator&&window.document),ea=!z&&"undefined"!==typeof importScripts,ja=
|
||||
z&&"PLAYSTATION 3"===navigator.platform?/^complete$/:/^(complete|loaded)$/,Y="undefined"!==typeof opera&&"[object Opera]"===opera.toString(),F={},q={},R=[],M=!1;if("undefined"===typeof define){if("undefined"!==typeof requirejs){if(G(requirejs))return;q=requirejs;requirejs=void 0}"undefined"!==typeof require&&!G(require)&&(q=require,require=void 0);g=requirejs=function(b,c,d,e){var n,p="_";!H(b)&&"string"!==typeof b&&(n=b,H(c)?(b=c,c=d,d=e):b=[]);n&&n.context&&(p=n.context);(e=m(F,p))||(e=F[p]=g.s.newContext(p));
|
||||
n&&e.configure(n);return e.require(b,c,d)};g.config=function(b){return g(b)};g.nextTick="undefined"!==typeof setTimeout?function(b){setTimeout(b,4)}:function(b){b()};require||(require=g);g.version="2.1.16";g.jsExtRegExp=/^\/|:|\?|\.js$/;g.isBrowser=z;x=g.s={contexts:F,newContext:ga};g({});v(["toUrl","undef","defined","specified"],function(b){g[b]=function(){var c=F._;return c.require[b].apply(c,arguments)}});if(z&&(y=x.head=document.getElementsByTagName("head")[0],D=document.getElementsByTagName("base")[0]))y=
|
||||
x.head=D.parentNode;g.onError=ca;g.createNode=function(b){var c=b.xhtml?document.createElementNS("http://www.w3.org/1999/xhtml","html:script"):document.createElement("script");c.type=b.scriptType||"text/javascript";c.charset="utf-8";c.async=!0;return c};g.load=function(b,c,d){var e=b&&b.config||{};if(z)return e=g.createNode(e,c,d),e.setAttribute("data-requirecontext",b.contextName),e.setAttribute("data-requiremodule",c),e.attachEvent&&!(e.attachEvent.toString&&0>e.attachEvent.toString().indexOf("[native code"))&&
|
||||
!Y?(M=!0,e.attachEvent("onreadystatechange",b.onScriptLoad)):(e.addEventListener("load",b.onScriptLoad,!1),e.addEventListener("error",b.onScriptError,!1)),e.src=d,J=e,D?y.insertBefore(e,D):y.appendChild(e),J=null,e;if(ea)try{importScripts(d),b.completeLoad(c)}catch(m){b.onError(C("importscripts","importScripts failed for "+c+" at "+d,m,[c]))}};z&&!q.skipDataMain&&T(document.getElementsByTagName("script"),function(b){y||(y=b.parentNode);if(I=b.getAttribute("data-main"))return s=I,q.baseUrl||(E=s.split("/"),
|
||||
s=E.pop(),O=E.length?E.join("/")+"/":"./",q.baseUrl=O),s=s.replace(Q,""),g.jsExtRegExp.test(s)&&(s=I),q.deps=q.deps?q.deps.concat(s):[s],!0});define=function(b,c,d){var e,g;"string"!==typeof b&&(d=c,c=b,b=null);H(c)||(d=c,c=null);!c&&G(d)&&(c=[],d.length&&(d.toString().replace(ka,"").replace(la,function(b,d){c.push(d)}),c=(1===d.length?["require"]:["require","exports","module"]).concat(c)));if(M){if(!(e=J))N&&"interactive"===N.readyState||T(document.getElementsByTagName("script"),function(b){if("interactive"===
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b.readyState)return N=b}),e=N;e&&(b||(b=e.getAttribute("data-requiremodule")),g=F[e.getAttribute("data-requirecontext")])}(g?g.defQueue:R).push([b,c,d])};define.amd={jQuery:!0};g.exec=function(b){return eval(b)};g(q)}})(this);
|
||||
|
|
@ -0,0 +1,4 @@
|
|||
<article>
|
||||
<h3><a href="{{location}}">{{title}}</a></h3>
|
||||
<p>{{summary}}</p>
|
||||
</article>
|
||||
|
|
@ -0,0 +1,88 @@
|
|||
require([
|
||||
base_url + '/mkdocs/js/mustache.min.js',
|
||||
base_url + '/mkdocs/js/lunr.min.js',
|
||||
'text!search-results-template.mustache',
|
||||
'text!../search_index.json',
|
||||
], function (Mustache, lunr, results_template, data) {
|
||||
"use strict";
|
||||
|
||||
function getSearchTerm()
|
||||
{
|
||||
var sPageURL = window.location.search.substring(1);
|
||||
var sURLVariables = sPageURL.split('&');
|
||||
for (var i = 0; i < sURLVariables.length; i++)
|
||||
{
|
||||
var sParameterName = sURLVariables[i].split('=');
|
||||
if (sParameterName[0] == 'q')
|
||||
{
|
||||
return decodeURIComponent(sParameterName[1].replace(/\+/g, '%20'));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
var index = lunr(function () {
|
||||
this.field('title', {boost: 10});
|
||||
this.field('text');
|
||||
this.ref('location');
|
||||
});
|
||||
|
||||
data = JSON.parse(data);
|
||||
var documents = {};
|
||||
|
||||
for (var i=0; i < data.docs.length; i++){
|
||||
var doc = data.docs[i];
|
||||
doc.location = base_url + doc.location;
|
||||
index.add(doc);
|
||||
documents[doc.location] = doc;
|
||||
}
|
||||
|
||||
var search = function(){
|
||||
|
||||
var query = document.getElementById('mkdocs-search-query').value;
|
||||
var search_results = document.getElementById("mkdocs-search-results");
|
||||
while (search_results.firstChild) {
|
||||
search_results.removeChild(search_results.firstChild);
|
||||
}
|
||||
|
||||
if(query === ''){
|
||||
return;
|
||||
}
|
||||
|
||||
var results = index.search(query);
|
||||
|
||||
if (results.length > 0){
|
||||
for (var i=0; i < results.length; i++){
|
||||
var result = results[i];
|
||||
doc = documents[result.ref];
|
||||
doc.base_url = base_url;
|
||||
doc.summary = doc.text.substring(0, 200);
|
||||
var html = Mustache.to_html(results_template, doc);
|
||||
search_results.insertAdjacentHTML('beforeend', html);
|
||||
}
|
||||
} else {
|
||||
search_results.insertAdjacentHTML('beforeend', "<p>No results found</p>");
|
||||
}
|
||||
|
||||
if(jQuery){
|
||||
/*
|
||||
* We currently only automatically hide bootstrap models. This
|
||||
* requires jQuery to work.
|
||||
*/
|
||||
jQuery('#mkdocs_search_modal a').click(function(){
|
||||
jQuery('#mkdocs_search_modal').modal('hide');
|
||||
});
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
var search_input = document.getElementById('mkdocs-search-query');
|
||||
|
||||
var term = getSearchTerm();
|
||||
if (term){
|
||||
search_input.value = term;
|
||||
search();
|
||||
}
|
||||
|
||||
search_input.addEventListener("keyup", search);
|
||||
|
||||
});
|
||||
|
|
@ -0,0 +1,390 @@
|
|||
/**
|
||||
* @license RequireJS text 2.0.12 Copyright (c) 2010-2014, The Dojo Foundation All Rights Reserved.
|
||||
* Available via the MIT or new BSD license.
|
||||
* see: http://github.com/requirejs/text for details
|
||||
*/
|
||||
/*jslint regexp: true */
|
||||
/*global require, XMLHttpRequest, ActiveXObject,
|
||||
define, window, process, Packages,
|
||||
java, location, Components, FileUtils */
|
||||
|
||||
define(['module'], function (module) {
|
||||
'use strict';
|
||||
|
||||
var text, fs, Cc, Ci, xpcIsWindows,
|
||||
progIds = ['Msxml2.XMLHTTP', 'Microsoft.XMLHTTP', 'Msxml2.XMLHTTP.4.0'],
|
||||
xmlRegExp = /^\s*<\?xml(\s)+version=[\'\"](\d)*.(\d)*[\'\"](\s)*\?>/im,
|
||||
bodyRegExp = /<body[^>]*>\s*([\s\S]+)\s*<\/body>/im,
|
||||
hasLocation = typeof location !== 'undefined' && location.href,
|
||||
defaultProtocol = hasLocation && location.protocol && location.protocol.replace(/\:/, ''),
|
||||
defaultHostName = hasLocation && location.hostname,
|
||||
defaultPort = hasLocation && (location.port || undefined),
|
||||
buildMap = {},
|
||||
masterConfig = (module.config && module.config()) || {};
|
||||
|
||||
text = {
|
||||
version: '2.0.12',
|
||||
|
||||
strip: function (content) {
|
||||
//Strips <?xml ...?> declarations so that external SVG and XML
|
||||
//documents can be added to a document without worry. Also, if the string
|
||||
//is an HTML document, only the part inside the body tag is returned.
|
||||
if (content) {
|
||||
content = content.replace(xmlRegExp, "");
|
||||
var matches = content.match(bodyRegExp);
|
||||
if (matches) {
|
||||
content = matches[1];
|
||||
}
|
||||
} else {
|
||||
content = "";
|
||||
}
|
||||
return content;
|
||||
},
|
||||
|
||||
jsEscape: function (content) {
|
||||
return content.replace(/(['\\])/g, '\\$1')
|
||||
.replace(/[\f]/g, "\\f")
|
||||
.replace(/[\b]/g, "\\b")
|
||||
.replace(/[\n]/g, "\\n")
|
||||
.replace(/[\t]/g, "\\t")
|
||||
.replace(/[\r]/g, "\\r")
|
||||
.replace(/[\u2028]/g, "\\u2028")
|
||||
.replace(/[\u2029]/g, "\\u2029");
|
||||
},
|
||||
|
||||
createXhr: masterConfig.createXhr || function () {
|
||||
//Would love to dump the ActiveX crap in here. Need IE 6 to die first.
|
||||
var xhr, i, progId;
|
||||
if (typeof XMLHttpRequest !== "undefined") {
|
||||
return new XMLHttpRequest();
|
||||
} else if (typeof ActiveXObject !== "undefined") {
|
||||
for (i = 0; i < 3; i += 1) {
|
||||
progId = progIds[i];
|
||||
try {
|
||||
xhr = new ActiveXObject(progId);
|
||||
} catch (e) {}
|
||||
|
||||
if (xhr) {
|
||||
progIds = [progId]; // so faster next time
|
||||
break;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return xhr;
|
||||
},
|
||||
|
||||
/**
|
||||
* Parses a resource name into its component parts. Resource names
|
||||
* look like: module/name.ext!strip, where the !strip part is
|
||||
* optional.
|
||||
* @param {String} name the resource name
|
||||
* @returns {Object} with properties "moduleName", "ext" and "strip"
|
||||
* where strip is a boolean.
|
||||
*/
|
||||
parseName: function (name) {
|
||||
var modName, ext, temp,
|
||||
strip = false,
|
||||
index = name.indexOf("."),
|
||||
isRelative = name.indexOf('./') === 0 ||
|
||||
name.indexOf('../') === 0;
|
||||
|
||||
if (index !== -1 && (!isRelative || index > 1)) {
|
||||
modName = name.substring(0, index);
|
||||
ext = name.substring(index + 1, name.length);
|
||||
} else {
|
||||
modName = name;
|
||||
}
|
||||
|
||||
temp = ext || modName;
|
||||
index = temp.indexOf("!");
|
||||
if (index !== -1) {
|
||||
//Pull off the strip arg.
|
||||
strip = temp.substring(index + 1) === "strip";
|
||||
temp = temp.substring(0, index);
|
||||
if (ext) {
|
||||
ext = temp;
|
||||
} else {
|
||||
modName = temp;
|
||||
}
|
||||
}
|
||||
|
||||
return {
|
||||
moduleName: modName,
|
||||
ext: ext,
|
||||
strip: strip
|
||||
};
|
||||
},
|
||||
|
||||
xdRegExp: /^((\w+)\:)?\/\/([^\/\\]+)/,
|
||||
|
||||
/**
|
||||
* Is an URL on another domain. Only works for browser use, returns
|
||||
* false in non-browser environments. Only used to know if an
|
||||
* optimized .js version of a text resource should be loaded
|
||||
* instead.
|
||||
* @param {String} url
|
||||
* @returns Boolean
|
||||
*/
|
||||
useXhr: function (url, protocol, hostname, port) {
|
||||
var uProtocol, uHostName, uPort,
|
||||
match = text.xdRegExp.exec(url);
|
||||
if (!match) {
|
||||
return true;
|
||||
}
|
||||
uProtocol = match[2];
|
||||
uHostName = match[3];
|
||||
|
||||
uHostName = uHostName.split(':');
|
||||
uPort = uHostName[1];
|
||||
uHostName = uHostName[0];
|
||||
|
||||
return (!uProtocol || uProtocol === protocol) &&
|
||||
(!uHostName || uHostName.toLowerCase() === hostname.toLowerCase()) &&
|
||||
((!uPort && !uHostName) || uPort === port);
|
||||
},
|
||||
|
||||
finishLoad: function (name, strip, content, onLoad) {
|
||||
content = strip ? text.strip(content) : content;
|
||||
if (masterConfig.isBuild) {
|
||||
buildMap[name] = content;
|
||||
}
|
||||
onLoad(content);
|
||||
},
|
||||
|
||||
load: function (name, req, onLoad, config) {
|
||||
//Name has format: some.module.filext!strip
|
||||
//The strip part is optional.
|
||||
//if strip is present, then that means only get the string contents
|
||||
//inside a body tag in an HTML string. For XML/SVG content it means
|
||||
//removing the <?xml ...?> declarations so the content can be inserted
|
||||
//into the current doc without problems.
|
||||
|
||||
// Do not bother with the work if a build and text will
|
||||
// not be inlined.
|
||||
if (config && config.isBuild && !config.inlineText) {
|
||||
onLoad();
|
||||
return;
|
||||
}
|
||||
|
||||
masterConfig.isBuild = config && config.isBuild;
|
||||
|
||||
var parsed = text.parseName(name),
|
||||
nonStripName = parsed.moduleName +
|
||||
(parsed.ext ? '.' + parsed.ext : ''),
|
||||
url = req.toUrl(nonStripName),
|
||||
useXhr = (masterConfig.useXhr) ||
|
||||
text.useXhr;
|
||||
|
||||
// Do not load if it is an empty: url
|
||||
if (url.indexOf('empty:') === 0) {
|
||||
onLoad();
|
||||
return;
|
||||
}
|
||||
|
||||
//Load the text. Use XHR if possible and in a browser.
|
||||
if (!hasLocation || useXhr(url, defaultProtocol, defaultHostName, defaultPort)) {
|
||||
text.get(url, function (content) {
|
||||
text.finishLoad(name, parsed.strip, content, onLoad);
|
||||
}, function (err) {
|
||||
if (onLoad.error) {
|
||||
onLoad.error(err);
|
||||
}
|
||||
});
|
||||
} else {
|
||||
//Need to fetch the resource across domains. Assume
|
||||
//the resource has been optimized into a JS module. Fetch
|
||||
//by the module name + extension, but do not include the
|
||||
//!strip part to avoid file system issues.
|
||||
req([nonStripName], function (content) {
|
||||
text.finishLoad(parsed.moduleName + '.' + parsed.ext,
|
||||
parsed.strip, content, onLoad);
|
||||
});
|
||||
}
|
||||
},
|
||||
|
||||
write: function (pluginName, moduleName, write, config) {
|
||||
if (buildMap.hasOwnProperty(moduleName)) {
|
||||
var content = text.jsEscape(buildMap[moduleName]);
|
||||
write.asModule(pluginName + "!" + moduleName,
|
||||
"define(function () { return '" +
|
||||
content +
|
||||
"';});\n");
|
||||
}
|
||||
},
|
||||
|
||||
writeFile: function (pluginName, moduleName, req, write, config) {
|
||||
var parsed = text.parseName(moduleName),
|
||||
extPart = parsed.ext ? '.' + parsed.ext : '',
|
||||
nonStripName = parsed.moduleName + extPart,
|
||||
//Use a '.js' file name so that it indicates it is a
|
||||
//script that can be loaded across domains.
|
||||
fileName = req.toUrl(parsed.moduleName + extPart) + '.js';
|
||||
|
||||
//Leverage own load() method to load plugin value, but only
|
||||
//write out values that do not have the strip argument,
|
||||
//to avoid any potential issues with ! in file names.
|
||||
text.load(nonStripName, req, function (value) {
|
||||
//Use own write() method to construct full module value.
|
||||
//But need to create shell that translates writeFile's
|
||||
//write() to the right interface.
|
||||
var textWrite = function (contents) {
|
||||
return write(fileName, contents);
|
||||
};
|
||||
textWrite.asModule = function (moduleName, contents) {
|
||||
return write.asModule(moduleName, fileName, contents);
|
||||
};
|
||||
|
||||
text.write(pluginName, nonStripName, textWrite, config);
|
||||
}, config);
|
||||
}
|
||||
};
|
||||
|
||||
if (masterConfig.env === 'node' || (!masterConfig.env &&
|
||||
typeof process !== "undefined" &&
|
||||
process.versions &&
|
||||
!!process.versions.node &&
|
||||
!process.versions['node-webkit'])) {
|
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fs = require.nodeRequire('fs');
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text.get = function (url, callback, errback) {
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|
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|
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|
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|
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err = new Error(url + ' HTTP status: ' + status);
|
||||
err.xhr = xhr;
|
||||
if (errback) {
|
||||
errback(err);
|
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|
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|
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callback(xhr.responseText);
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|
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|
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|
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|
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|
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|
||||
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|
||||
text.get = function (url, callback) {
|
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var stringBuffer, line,
|
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|
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|
||||
input = new java.io.BufferedReader(new java.io.InputStreamReader(new java.io.FileInputStream(file), encoding)),
|
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content = '';
|
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try {
|
||||
stringBuffer = new java.lang.StringBuffer();
|
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line = input.readLine();
|
||||
|
||||
// Byte Order Mark (BOM) - The Unicode Standard, version 3.0, page 324
|
||||
// http://www.unicode.org/faq/utf_bom.html
|
||||
|
||||
// Note that when we use utf-8, the BOM should appear as "EF BB BF", but it doesn't due to this bug in the JDK:
|
||||
// http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=4508058
|
||||
if (line && line.length() && line.charAt(0) === 0xfeff) {
|
||||
// Eat the BOM, since we've already found the encoding on this file,
|
||||
// and we plan to concatenating this buffer with others; the BOM should
|
||||
// only appear at the top of a file.
|
||||
line = line.substring(1);
|
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|
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|
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if (line !== null) {
|
||||
stringBuffer.append(line);
|
||||
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|
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|
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while ((line = input.readLine()) !== null) {
|
||||
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|
||||
stringBuffer.append(line);
|
||||
}
|
||||
//Make sure we return a JavaScript string and not a Java string.
|
||||
content = String(stringBuffer.toString()); //String
|
||||
} finally {
|
||||
input.close();
|
||||
}
|
||||
callback(content);
|
||||
};
|
||||
} else if (masterConfig.env === 'xpconnect' || (!masterConfig.env &&
|
||||
typeof Components !== 'undefined' && Components.classes &&
|
||||
Components.interfaces)) {
|
||||
//Avert your gaze!
|
||||
Cc = Components.classes;
|
||||
Ci = Components.interfaces;
|
||||
Components.utils['import']('resource://gre/modules/FileUtils.jsm');
|
||||
xpcIsWindows = ('@mozilla.org/windows-registry-key;1' in Cc);
|
||||
|
||||
text.get = function (url, callback) {
|
||||
var inStream, convertStream, fileObj,
|
||||
readData = {};
|
||||
|
||||
if (xpcIsWindows) {
|
||||
url = url.replace(/\//g, '\\');
|
||||
}
|
||||
|
||||
fileObj = new FileUtils.File(url);
|
||||
|
||||
//XPCOM, you so crazy
|
||||
try {
|
||||
inStream = Cc['@mozilla.org/network/file-input-stream;1']
|
||||
.createInstance(Ci.nsIFileInputStream);
|
||||
inStream.init(fileObj, 1, 0, false);
|
||||
|
||||
convertStream = Cc['@mozilla.org/intl/converter-input-stream;1']
|
||||
.createInstance(Ci.nsIConverterInputStream);
|
||||
convertStream.init(inStream, "utf-8", inStream.available(),
|
||||
Ci.nsIConverterInputStream.DEFAULT_REPLACEMENT_CHARACTER);
|
||||
|
||||
convertStream.readString(inStream.available(), readData);
|
||||
convertStream.close();
|
||||
inStream.close();
|
||||
callback(readData.value);
|
||||
} catch (e) {
|
||||
throw new Error((fileObj && fileObj.path || '') + ': ' + e);
|
||||
}
|
||||
};
|
||||
}
|
||||
return text;
|
||||
});
|
||||
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|
|
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Working with Jupyter notebooks
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Weaving
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<article class="article">
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<div class="wrapper">
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||||
<p><a id='Working-with-Jupyter-notebooks-1'></a></p>
|
||||
<h1 id="working-with-jupyter-notebooks">Working with Jupyter notebooks</h1>
|
||||
<p><a id='Weaving-1'></a></p>
|
||||
<h2 id="weaving">Weaving</h2>
|
||||
<p>Weave supports using Jupyter notebooks as input format, this means you can weave notebooks to any supported formats. You can't use chunk options with notebooks.</p>
|
||||
<div class="code"><pre><span></span><span class="n">weave</span><span class="p">(</span><span class="s">"notebook.ipynb"</span><span class="p">)</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p>In order to output notebooks from other formats you need to convert the document to a notebook and run the code using IJulia.</p>
|
||||
<p><a id='Converting-between-formats-1'></a></p>
|
||||
<h2 id="converting-between-formats">Converting between formats</h2>
|
||||
<p>You can convert between all supported input formats using the <code>convert_doc</code> function.</p>
|
||||
<p>To convert from script to notebook:</p>
|
||||
<div class="code"><pre><span></span><span class="n">convert_doc</span><span class="p">(</span><span class="s">"examples/FIR_design.jl"</span><span class="p">,</span> <span class="s">"FIR_design.ipynb"</span><span class="p">)</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p>and from notebooks to markdown use:</p>
|
||||
<div class="code"><pre><span></span><span class="n">convert_doc</span><span class="p">(</span><span class="s">"FIR_design.ipynb"</span><span class="p">,</span> <span class="s">"FIR_design.jmd"</span><span class="p">)</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p><a id='Weave.convert_doc-Tuple{String,String}' href='#Weave.convert_doc-Tuple{String,String}'>#</a>
|
||||
<strong><code>Weave.convert_doc</code></strong> — <em>Method</em>.</p>
|
||||
<p><code>convert_doc(infile::AbstractString, outfile::AbstractString; format = nothing)</code></p>
|
||||
<p>Convert Weave documents between different formats</p>
|
||||
<ul>
|
||||
<li><code>infile</code> = Name of the input document</li>
|
||||
<li><code>outfile</code> = Name of the output document</li>
|
||||
<li><code>format</code> = Output format (optional). Detected from outfile extension, but can be set to <code>"script"</code>, <code>"markdown"</code>, <code>"notebook"</code> or <code>"noweb"</code>.</li>
|
||||
</ul>
|
||||
<aside class="copyright" role="note">
|
||||
|
||||
Matti Pastell 2016 –
|
||||
|
||||
Documentation built with
|
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<a href="http://www.mkdocs.org" target="_blank">MkDocs</a>
|
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using the
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Publishing scripts
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||||
<p><a id='Publishing-scripts-1'></a></p>
|
||||
<h1 id="publishing-scripts">Publishing scripts</h1>
|
||||
<p>You can also also publish html and pdf documents from Julia scripts with a specific format. Producing HTML and pdf output requires that you have Pandoc and XeLatex (for pdf) installed and in your path.</p>
|
||||
<p>These scripts can be executed normally using Julia or published with Weave. Documentation is written in markdown in lines starting with <code>#'</code>, <code>#%%</code> or <code># %%</code>, and code is executed and results are included in the published document.</p>
|
||||
<p>The format is identical to <a href="http://mpastell.com/pweave/pypublish.html">Pweave</a> and the concept is similar to publishing documents with MATLAB or using Knitr's <a href="http://yihui.name/knitr/demo/stitch/">spin</a>. Weave will remove the first empty space from each line of documentation.</p>
|
||||
<p>All lines that are not documentation are treated as code. You can set chunk options using lines starting with <code>#+</code> just before code e.g. <code>#+ term=true</code>. See the example below for the markup.</p>
|
||||
<p><a href="../examples/FIR_design.jl">FIR_design.jl</a>, <a href="../examples/FIR_design.html">FIR_design.html</a> , <a href="../examples/FIR_design.pdf">FIR_design.pdf</a>.</p>
|
||||
<div class="code"><pre><span></span><span class="n">weave</span><span class="p">(</span><span class="s">"FIR_design.jl"</span><span class="p">)</span>
|
||||
<span class="n">weave</span><span class="p">(</span><span class="s">"FIR_design.jl"</span><span class="p">,</span> <span class="n">docformat</span> <span class="o">=</span> <span class="s">"md2pdf"</span><span class="p">)</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p><a id='Other-mark-ups-with-scripts-1'></a></p>
|
||||
<h2 id="other-mark-ups-with-scripts">Other mark ups with scripts</h2>
|
||||
<p>You can also use any Weave supported format in the comments and set the output format as you would for noweb and markdown inputs. e.g for LaTeX you can use:</p>
|
||||
<div class="code"><pre><span></span><span class="n">weave</span><span class="p">(</span><span class="s">"latex_doc.jl"</span><span class="p">,</span> <span class="n">docformat</span> <span class="o">=</span> <span class="s">"texminted"</span><span class="p">)</span>
|
||||
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<div class="title">
|
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|
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<span class="path">
|
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|
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</span>
|
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|
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Using Weave
|
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<input class="query" type="text" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck>
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|
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<strong>
|
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Weave.jl - Scientific Reports Using Julia
|
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|
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|
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</span>
|
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</strong>
|
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|
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<br>
|
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mpastell/Weave.jl
|
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|
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|
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<a href="https://github.com/mpastell/Weave.jl/archive/master.zip" target="_blank" title="Download" data-action="download">
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<i class="icon icon-download"></i> Download
|
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<a href="https://github.com/mpastell/Weave.jl/stargazers" target="_blank" title="Stargazers" data-action="star">
|
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<i class="icon icon-star"></i> Stars
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|
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|
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Getting started
|
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Using Weave
|
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<ul>
|
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<li class="anchor">
|
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<a title="Weave" href="#weave">
|
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Weave
|
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</a>
|
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</li>
|
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|
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<li class="anchor">
|
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<a title="Weave from shell" href="#weave-from-shell">
|
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Weave from shell
|
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</a>
|
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</li>
|
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|
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<li class="anchor">
|
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<a title="Tangle" href="#tangle">
|
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Tangle
|
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</a>
|
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|
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|
||||
<li class="anchor">
|
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<a title="Supported formats" href="#supported-formats">
|
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Supported formats
|
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</a>
|
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</li>
|
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|
||||
<li class="anchor">
|
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<a title="Document syntax" href="#document-syntax">
|
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Document syntax
|
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</a>
|
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</li>
|
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|
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<li class="anchor">
|
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<a title="Noweb" href="#noweb">
|
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Noweb
|
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|
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|
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<a title="Markdown" href="#markdown">
|
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Markdown
|
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|
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|
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|
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Publishing scripts
|
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|
||||
|
||||
<li>
|
||||
<a class="" title="Chunk options" href="../chunk_options/">
|
||||
Chunk options
|
||||
</a>
|
||||
|
||||
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|
||||
|
||||
|
||||
|
||||
<li>
|
||||
<a class="" title="Working with Jupyter notebooks" href="../notebooks/">
|
||||
Working with Jupyter notebooks
|
||||
</a>
|
||||
|
||||
</li>
|
||||
|
||||
|
||||
|
||||
<li>
|
||||
<a class="" title="Function index" href="../function_index/">
|
||||
Function index
|
||||
</a>
|
||||
|
||||
</li>
|
||||
|
||||
|
||||
</ul>
|
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|
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</div>
|
||||
</div>
|
||||
</nav>
|
||||
</div>
|
||||
<article class="article">
|
||||
<div class="wrapper">
|
||||
|
||||
<p><a id='Using-Weave-1'></a></p>
|
||||
<h1 id="using-weave">Using Weave</h1>
|
||||
<p>You can write your documentation and code in input document using Noweb or Markdown syntax and use <code>weave</code> function to execute to document to capture results and figures.</p>
|
||||
<p><a id='Weave-1'></a></p>
|
||||
<h2 id="weave">Weave</h2>
|
||||
<p>Weave document with markup and julia code using Gadfly for plots, <code>out_path = :pwd</code> makes the results appear in the current working directory.</p>
|
||||
<div class="code"><pre><span></span><span class="k">using</span> <span class="n">Weave</span>
|
||||
<span class="n">weave</span><span class="p">(</span><span class="n">Pkg</span><span class="o">.</span><span class="n">dir</span><span class="p">(</span><span class="s">"Weave"</span><span class="p">,</span><span class="s">"examples"</span><span class="p">,</span><span class="s">"gadfly_sample.mdw"</span><span class="p">),</span> <span class="n">out_path</span> <span class="o">=</span> <span class="p">:</span><span class="n">pwd</span><span class="p">)</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p>Using PyPlot:</p>
|
||||
<div class="code"><pre><span></span><span class="n">weave</span><span class="p">(</span><span class="n">Pkg</span><span class="o">.</span><span class="n">dir</span><span class="p">(</span><span class="s">"Weave"</span><span class="p">,</span><span class="s">"examples"</span><span class="p">,</span><span class="s">"julia_sample.mdw"</span><span class="p">),</span> <span class="n">plotlib</span><span class="o">=</span><span class="s">"PyPlot"</span><span class="p">,</span> <span class="n">out_path</span> <span class="o">=</span> <span class="p">:</span><span class="n">pwd</span><span class="p">)</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p><a id='Weave.weave-Tuple{Any}' href='#Weave.weave-Tuple{Any}'>#</a>
|
||||
<strong><code>Weave.weave</code></strong> — <em>Method</em>.</p>
|
||||
<p><code>function weave(source ; doctype = :auto, plotlib="Gadfly", informat=:auto, out_path=:doc, fig_path = "figures", fig_ext = nothing, cache_path = "cache", cache=:off)</code></p>
|
||||
<p>Weave an input document to output file.</p>
|
||||
<ul>
|
||||
<li><code>doctype</code>: :auto = set based on file extension or specify one of the supported formats. See <code>list_out_formats()</code></li>
|
||||
<li><code>plotlib</code>: <code>"PyPlot"</code>, <code>"Gadfly"</code> or <code>nothing</code></li>
|
||||
<li><code>informat</code>: :auto = set based on file extension or set to <code>"noweb"</code>, <code>"markdown"</code> or <code>script</code></li>
|
||||
<li><code>out_path</code>: Path where the output is generated. Can be: <code>:doc</code>: Path of the source document, <code>:pwd</code>: Julia working directory, <code>"somepath"</code>: output directory as a String e.g <code>"/home/mpastell/weaveout"</code> or filename as string e.g. ~/outpath/outfile.tex.</li>
|
||||
<li><code>fig_path</code>: where figures will be generated, relative to out_path</li>
|
||||
<li><code>fig_ext</code>: Extension for saved figures e.g. <code>".pdf"</code>, <code>".png"</code>. Default setting depends on <code>doctype</code>.</li>
|
||||
<li><code>cache_path</code>: where of cached output will be saved.</li>
|
||||
<li><code>cache</code>: controls caching of code: <code>:off</code> = no caching, <code>:all</code> = cache everything, <code>:user</code> = cache based on chunk options, <code>:refresh</code>, run all code chunks and save new cache.</li>
|
||||
</ul>
|
||||
<p><strong>Note:</strong> Run Weave from terminal and not using IJulia, Juno or ESS, they tend to mess with capturing output.</p>
|
||||
<p><a id='Weave-from-shell-1'></a></p>
|
||||
<h2 id="weave-from-shell">Weave from shell</h2>
|
||||
<p>You can also use the <code>weave.jl</code> script under bin directory to weave documents from the shell:</p>
|
||||
<div class="code"><pre><span></span>$ ./weave.jl
|
||||
usage: weave.jl <span class="o">[</span>--doctype DOCTYPE<span class="o">]</span> <span class="o">[</span>--plotlib PLOTLIB<span class="o">]</span>
|
||||
<span class="o">[</span>--informat INFORMAT<span class="o">]</span> <span class="o">[</span>--out_path OUT_PATH<span class="o">]</span>
|
||||
<span class="o">[</span>--fig_path FIG_PATH<span class="o">]</span> <span class="o">[</span>--fig_ext FIG_EXT<span class="o">]</span> source...
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p><a id='Tangle-1'></a></p>
|
||||
<h2 id="tangle">Tangle</h2>
|
||||
<p>Tangling extracts the code from document:</p>
|
||||
<p><a id='Weave.tangle-Tuple{Any}' href='#Weave.tangle-Tuple{Any}'>#</a>
|
||||
<strong><code>Weave.tangle</code></strong> — <em>Method</em>.</p>
|
||||
<p><code>tangle(source ; out_path=:doc, informat="noweb")</code></p>
|
||||
<p>Tangle source code from input document to .jl file.</p>
|
||||
<ul>
|
||||
<li><code>informat</code>: <code>"noweb"</code> of <code>"markdown"</code></li>
|
||||
<li><code>out_path</code>: Path where the output is generated. Can be: <code>:doc</code>: Path of the source document, <code>:pwd</code>: Julia working directory, <code>"somepath"</code>, directory name as a string e.g <code>"/home/mpastell/weaveout"</code></li>
|
||||
</ul>
|
||||
<p>or filename as string e.g. ~/outpath/outfile.jl.</p>
|
||||
<p><a id='Supported-formats-1'></a></p>
|
||||
<h2 id="supported-formats">Supported formats</h2>
|
||||
<p>Weave sets the output format based on the file extension, but you can also set it using <code>doctype</code> option. The rules for detecting the format are:</p>
|
||||
<div class="code"><pre><span></span><span class="n">ext</span> <span class="o">==</span> <span class="s">".jl"</span> <span class="o">&&</span> <span class="k">return</span> <span class="s">"md2html"</span>
|
||||
<span class="n">contains</span><span class="p">(</span><span class="n">ext</span><span class="p">,</span> <span class="s">".md"</span><span class="p">)</span> <span class="o">&&</span> <span class="k">return</span> <span class="s">"md2html"</span>
|
||||
<span class="n">contains</span><span class="p">(</span><span class="n">ext</span><span class="p">,</span> <span class="s">".rst"</span><span class="p">)</span> <span class="o">&&</span> <span class="k">return</span> <span class="s">"rst"</span>
|
||||
<span class="n">contains</span><span class="p">(</span><span class="n">ext</span><span class="p">,</span> <span class="s">".tex"</span><span class="p">)</span> <span class="o">&&</span> <span class="k">return</span> <span class="s">"texminted"</span>
|
||||
<span class="n">contains</span><span class="p">(</span><span class="n">ext</span><span class="p">,</span> <span class="s">".txt"</span><span class="p">)</span> <span class="o">&&</span> <span class="k">return</span> <span class="s">"asciidoc"</span>
|
||||
<span class="k">return</span> <span class="s">"pandoc"</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p>You can get a list of supported output formats:</p>
|
||||
<div class="code"><pre><span></span><span class="n">julia</span><span class="o">></span> <span class="n">list_out_formats</span><span class="p">()</span>
|
||||
<span class="n">pandoc</span><span class="p">:</span> <span class="n">Pandoc</span> <span class="n">markdown</span>
|
||||
<span class="n">rst</span><span class="p">:</span> <span class="n">reStructuredText</span> <span class="n">and</span> <span class="n">Sphinx</span>
|
||||
<span class="n">texminted</span><span class="p">:</span> <span class="n">Latex</span> <span class="k">using</span> <span class="n">minted</span> <span class="k">for</span> <span class="n">highlighting</span>
|
||||
<span class="n">github</span><span class="p">:</span> <span class="n">Github</span> <span class="n">markdown</span>
|
||||
<span class="n">md2html</span><span class="p">:</span> <span class="n">Markdown</span> <span class="n">to</span> <span class="n">HTML</span> <span class="p">(</span><span class="n">requires</span> <span class="n">Pandoc</span><span class="p">)</span>
|
||||
<span class="n">md2pdf</span><span class="p">:</span> <span class="n">Markdown</span> <span class="n">to</span> <span class="n">pdf</span> <span class="p">(</span><span class="n">requires</span> <span class="n">Pandoc</span> <span class="n">and</span> <span class="n">xelatex</span><span class="p">)</span>
|
||||
<span class="n">asciidoc</span><span class="p">:</span> <span class="n">AsciiDoc</span>
|
||||
<span class="n">tex</span><span class="p">:</span> <span class="n">Latex</span> <span class="n">with</span> <span class="n">custom</span> <span class="n">code</span> <span class="n">environments</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p><a id='Weave.list_out_formats-Tuple{}' href='#Weave.list_out_formats-Tuple{}'>#</a>
|
||||
<strong><code>Weave.list_out_formats</code></strong> — <em>Method</em>.</p>
|
||||
<p><code>list_out_formats()</code></p>
|
||||
<p>List supported output formats</p>
|
||||
<p><a id='Document-syntax-1'></a></p>
|
||||
<h2 id="document-syntax">Document syntax</h2>
|
||||
<p>Weave uses noweb, markdown or script syntax for defining the code chunks and documentation chunks. You can also weave Jupyter notebooks. The format is detected based on the file extension, but you can also set it manually using the <code>informat</code> parameter.</p>
|
||||
<p>The rules for autodetection are:</p>
|
||||
<div class="code"><pre><span></span><span class="n">ext</span> <span class="o">==</span> <span class="s">".jl"</span> <span class="o">&&</span> <span class="k">return</span> <span class="s">"script"</span>
|
||||
<span class="n">ext</span> <span class="o">==</span> <span class="s">".jmd"</span> <span class="o">&&</span> <span class="k">return</span> <span class="s">"markdown"</span>
|
||||
<span class="n">ext</span> <span class="o">==</span> <span class="s">".ipynb"</span> <span class="o">&&</span> <span class="k">return</span> <span class="s">"notebook"</span>
|
||||
<span class="k">return</span> <span class="s">"noweb"</span>
|
||||
</pre></div>
|
||||
|
||||
|
||||
<p><a id='Noweb-1'></a></p>
|
||||
<h2 id="noweb">Noweb</h2>
|
||||
<p><a id='Code-chunks-1'></a></p>
|
||||
<h3 id="code-chunks">Code chunks</h3>
|
||||
<p>start with a line marked with <code><<>>=</code> or <code><<options>>=</code> and end with line marked with <code>@</code>. The code between the start and end markers is executed and the output is captured to the output document. See for options below.</p>
|
||||
<p><a id='Documentation-chunks-1'></a></p>
|
||||
<h3 id="documentation-chunks">Documentation chunks</h3>
|
||||
<p>Are the rest of the document (between <code>@</code> and <code><<>>=</code> lines and the first chunk be default) and can be written with several different markup languages.</p>
|
||||
<p><a href="https://github.com/mpastell/Weave.jl/blob/master/examples/julia_sample.mdw">Sample document</a></p>
|
||||
<p><a id='Markdown-1'></a></p>
|
||||
<h2 id="markdown">Markdown</h2>
|
||||
<p>Markdown code chunks are defined using fenced code blocks. <a href="https://github.com/mpastell/Weave.jl/blob/master/examples/gadfly_md_sample.jmd">See sample document:</a></p>
|
||||
<aside class="copyright" role="note">
|
||||
|
||||
Matti Pastell 2016 –
|
||||
|
||||
Documentation built with
|
||||
<a href="http://www.mkdocs.org" target="_blank">MkDocs</a>
|
||||
using the
|
||||
<a href="http://squidfunk.github.io/mkdocs-material/" target="_blank">
|
||||
Material
|
||||
</a>
|
||||
theme.
|
||||
</aside>
|
||||
|
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<footer class="footer">
|
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|
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<nav class="pagination" aria-label="Footer">
|
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|
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|
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|
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Previous
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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||||
<div class="meta"></div>
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<div class="list"></div>
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var repo_id = 'mpastell/Weave.jl';
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File diff suppressed because one or more lines are too long
|
|
@ -0,0 +1,111 @@
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% FIR filter design with Julia
|
||||
% Matti Pastell
|
||||
% 21th April 2016
|
||||
|
||||
# Introduction
|
||||
|
||||
This an example of a julia script that can be published using
|
||||
[Weave](http://mpastell.github.io/Weave.jl/latest/usage/).
|
||||
The script can be executed normally using Julia
|
||||
or published to HTML or pdf with Weave.
|
||||
Text is written in markdown in lines starting with "`#'` " and code
|
||||
is executed and results are included in the published document.
|
||||
|
||||
Notice that you don't need to define chunk options, but you can using
|
||||
`#+`. just before code e.g. `#+ term=True, caption='Fancy plots.'`.
|
||||
If you're viewing the published version have a look at the
|
||||
[source](FIR_design.jl) to see the markup.
|
||||
|
||||
|
||||
# FIR Filter Design
|
||||
|
||||
We'll implement lowpass, highpass and ' bandpass FIR filters. If
|
||||
you want to read more about DSP I highly recommend [The Scientist
|
||||
and Engineer's Guide to Digital Signal
|
||||
Processing](http://www.dspguide.com/) which is freely available
|
||||
online.
|
||||
|
||||
## Calculating frequency response
|
||||
|
||||
DSP.jl package doesn't (yet) have a method to calculate the
|
||||
the frequency response of a FIR filter so we define it:
|
||||
|
||||
|
||||
````julia
|
||||
using Gadfly, DSP
|
||||
|
||||
function FIRfreqz(b::Array, w = linspace(0, π, 1024))
|
||||
n = length(w)
|
||||
h = Array{Complex64}(n)
|
||||
sw = 0
|
||||
for i = 1:n
|
||||
for j = 1:length(b)
|
||||
sw += b[j]*exp(-im*w[i])^-j
|
||||
end
|
||||
h[i] = sw
|
||||
sw = 0
|
||||
end
|
||||
return h
|
||||
end
|
||||
````
|
||||
|
||||
|
||||
|
||||
|
||||
## Design Lowpass FIR filter
|
||||
|
||||
Designing a lowpass FIR filter is very simple to do with DSP.jl, all you
|
||||
need to do is to define the window length, cut off frequency and the
|
||||
window. We will define a lowpass filter with cut off frequency at 5Hz for a signal
|
||||
sampled at 20 Hz.
|
||||
We will use the Hamming window, which is defined as:
|
||||
$w(n) = \alpha - \beta\cos\frac{2\pi n}{N-1}$, where $\alpha=0.54$ and $\beta=0.46$
|
||||
|
||||
|
||||
````julia
|
||||
fs = 20
|
||||
f = digitalfilter(Lowpass(5, fs = fs), FIRWindow(hamming(61)))
|
||||
w = linspace(0, pi, 1024)
|
||||
h = FIRfreqz(f, w)
|
||||
````
|
||||
|
||||
|
||||
|
||||
|
||||
## Plot the frequency and impulse response
|
||||
|
||||
The next code chunk is executed in term mode, see the [script](FIR_design.jl) for syntax.
|
||||
|
||||
````julia
|
||||
julia>
|
||||
h_db = log10(abs(h));
|
||||
|
||||
julia> ws = w/pi*(fs/2)
|
||||
1024-element LinSpace{Float64}:
|
||||
0.0,0.00977517,0.0195503,0.0293255,…,9.9609,9.97067,9.98045,9.99022,10.0
|
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````
|
||||
|
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|
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|
||||
````julia
|
||||
|
||||
plot(y = h_db, x = ws, Geom.line,
|
||||
Guide.xlabel("Frequency (Hz)"), Guide.ylabel("Magnitude (db)"))
|
||||
````
|
||||
|
||||
|
||||
\
|
||||
|
||||
|
||||
|
||||
And again with default options
|
||||
|
||||
|
||||
````julia
|
||||
h_phase = unwrap(-atan2(imag(h),real(h)))
|
||||
plot(y = h_phase, x = ws, Geom.line,
|
||||
Guide.xlabel("Frequency (Hz)"), Guide.ylabel("Phase (radians)"))
|
||||
````
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||||
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\
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|
|
@ -0,0 +1,68 @@
|
|||
|
||||
# Introducion to Weave
|
||||
|
||||
This a sample [Julia](http://julialang.org/) noweb document that can
|
||||
be executed using Weave. Output from code chunks and PyPlot
|
||||
plots will be included in the weaved document. You also need to install Pweave from Github in order to use Weave.
|
||||
|
||||
This documented can be turned into Pandoc markdown with captured
|
||||
result from Julia prompt.
|
||||
|
||||
~~~~{.julia}
|
||||
using Weave
|
||||
weave("examples/julia_sample.mdw")
|
||||
~~~~
|
||||
|
||||
## Terminal chunk
|
||||
|
||||
````julia
|
||||
julia> x = 1:10
|
||||
|
||||
1:10
|
||||
julia> d = Dict("Weave" => "testing")
|
||||
|
||||
Dict{String,String} with 1 entry:
|
||||
"Weave" => "testing"
|
||||
julia> y = [2, 4 ,8]
|
||||
3-element Array{Int64,1}:
|
||||
2
|
||||
4
|
||||
8
|
||||
````
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## Capturing figures
|
||||
|
||||
The figures and code can be included in the output.
|
||||
|
||||
````julia
|
||||
using PyPlot
|
||||
t = linspace(0, 2*pi, 100)
|
||||
plot(t, sinc(t))
|
||||
xlabel("x")
|
||||
ylabel("sinc(x)")
|
||||
````
|
||||
|
||||
|
||||
````
|
||||
PyObject <matplotlib.text.Text object at 0x7fa4afb91a20>
|
||||
````
|
||||
|
||||
|
||||
\
|
||||
|
||||
|
||||
|
||||
|
||||
You can also include a plot with caption and hide the code:
|
||||
|
||||
````
|
||||
1-element Array{Any,1}:
|
||||
PyObject <matplotlib.lines.Line2D object at 0x7fa4d272bd30>
|
||||
````
|
||||
|
||||
|
||||
|
||||
|
|
@ -0,0 +1,97 @@
|
|||
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml">
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
<meta http-equiv="Content-Style-Type" content="text/css" />
|
||||
<meta name="generator" content="pandoc" />
|
||||
<title></title>
|
||||
<style type="text/css">code{white-space: pre;}</style>
|
||||
<style type="text/css">
|
||||
div.sourceCode { overflow-x: auto; }
|
||||
table.sourceCode, tr.sourceCode, td.lineNumbers, td.sourceCode {
|
||||
margin: 0; padding: 0; vertical-align: baseline; border: none; }
|
||||
table.sourceCode { width: 100%; line-height: 100%; }
|
||||
td.lineNumbers { text-align: right; padding-right: 4px; padding-left: 4px; color: #aaaaaa; border-right: 1px solid #aaaaaa; }
|
||||
td.sourceCode { padding-left: 5px; }
|
||||
code > span.kw { color: #007020; font-weight: bold; } /* Keyword */
|
||||
code > span.dt { color: #902000; } /* DataType */
|
||||
code > span.dv { color: #40a070; } /* DecVal */
|
||||
code > span.bn { color: #40a070; } /* BaseN */
|
||||
code > span.fl { color: #40a070; } /* Float */
|
||||
code > span.ch { color: #4070a0; } /* Char */
|
||||
code > span.st { color: #4070a0; } /* String */
|
||||
code > span.co { color: #60a0b0; font-style: italic; } /* Comment */
|
||||
code > span.ot { color: #007020; } /* Other */
|
||||
code > span.al { color: #ff0000; font-weight: bold; } /* Alert */
|
||||
code > span.fu { color: #06287e; } /* Function */
|
||||
code > span.er { color: #ff0000; font-weight: bold; } /* Error */
|
||||
code > span.wa { color: #60a0b0; font-weight: bold; font-style: italic; } /* Warning */
|
||||
code > span.cn { color: #880000; } /* Constant */
|
||||
code > span.sc { color: #4070a0; } /* SpecialChar */
|
||||
code > span.vs { color: #4070a0; } /* VerbatimString */
|
||||
code > span.ss { color: #bb6688; } /* SpecialString */
|
||||
code > span.im { } /* Import */
|
||||
code > span.va { color: #19177c; } /* Variable */
|
||||
code > span.cf { color: #007020; font-weight: bold; } /* ControlFlow */
|
||||
code > span.op { color: #666666; } /* Operator */
|
||||
code > span.bu { } /* BuiltIn */
|
||||
code > span.ex { } /* Extension */
|
||||
code > span.pp { color: #bc7a00; } /* Preprocessor */
|
||||
code > span.at { color: #7d9029; } /* Attribute */
|
||||
code > span.do { color: #ba2121; font-style: italic; } /* Documentation */
|
||||
code > span.an { color: #60a0b0; font-weight: bold; font-style: italic; } /* Annotation */
|
||||
code > span.cv { color: #60a0b0; font-weight: bold; font-style: italic; } /* CommentVar */
|
||||
code > span.in { color: #60a0b0; font-weight: bold; font-style: italic; } /* Information */
|
||||
</style>
|
||||
</head>
|
||||
<body>
|
||||
<h1 id="introducion-to-weave">Introducion to Weave</h1>
|
||||
<p>This a sample <a href="http://julialang.org/">Julia</a> noweb document that can be executed using Weave. Output from code chunks and Winston plots will be included in the weaved document. You also need to install Pweave from Github in order to use Weave.</p>
|
||||
<p>This documented can be turned into Pandoc markdown with captured result from Julia prompt.</p>
|
||||
<div class="sourceCode"><pre class="sourceCode julia"><code class="sourceCode julia">using Weave
|
||||
weave(Pkg.dir(<span class="st">"Weave"</span>,<span class="st">"examples"</span>,<span class="st">"winston_sample.mdw"</span>), plotlib=<span class="st">"Winston"</span>)</code></pre></div>
|
||||
<h2 id="terminal-chunk">Terminal chunk</h2>
|
||||
<div class="sourceCode"><pre class="sourceCode julia"><code class="sourceCode julia">julia> x = <span class="fl">1</span>:<span class="fl">10</span>
|
||||
|
||||
<span class="fl">1</span>:<span class="fl">10</span>
|
||||
julia> d = <span class="dt">Dict</span>(<span class="st">"Weave"</span> => <span class="st">"testing"</span>)
|
||||
|
||||
<span class="dt">Dict</span>{<span class="dt">String</span>,<span class="dt">String</span>} with <span class="fl">1</span> entry:
|
||||
<span class="st">"Weave"</span> => <span class="st">"testing"</span>
|
||||
julia> y = [<span class="fl">2</span>, <span class="fl">4</span> ,<span class="fl">8</span>]
|
||||
<span class="fl">3</span>-element <span class="dt">Array</span>{<span class="dt">Int64</span>,<span class="fl">1</span>}:
|
||||
<span class="fl">2</span>
|
||||
<span class="fl">4</span>
|
||||
<span class="fl">8</span></code></pre></div>
|
||||
<h2 id="capturing-figures">Capturing figures</h2>
|
||||
<p>The figures and code can be included in the output.</p>
|
||||
<div class="sourceCode"><pre class="sourceCode julia"><code class="sourceCode julia">julia> using Winston
|
||||
|
||||
julia> t = linspace(<span class="fl">0</span>, <span class="fl">2</span>*pi, <span class="fl">100</span>)
|
||||
|
||||
<span class="fl">100</span>-element LinSpace{<span class="dt">Float64</span>}:
|
||||
<span class="fl">0.0</span>,<span class="fl">0.0634665</span>,<span class="fl">0.126933</span>,<span class="fl">0.1904</span>,<span class="fl">0.253866</span>,…,<span class="fl">6.09279</span>,<span class="fl">6.15625</span>,<span class="fl">6.21972</span>,<span class="fl">6.28319</span>
|
||||
julia> p = plot(t, sinc(t))
|
||||
Winston.FramedPlot(...)</code></pre></div>
|
||||
<p><img src="figures/winston_sample_2_1.png" /> </p>
|
||||
<p>You can also include a plot with caption and hide the code:</p>
|
||||
<div class="figure">
|
||||
<img src="figures/winston_sample_random_1.png" alt="Random walk." />
|
||||
<p class="caption">Random walk.</p>
|
||||
</div>
|
||||
<div class="sourceCode"><pre class="sourceCode julia"><code class="sourceCode julia">x = linspace(<span class="fl">0</span>, <span class="fl">3</span>pi, <span class="fl">100</span>)
|
||||
c = cos(x)
|
||||
s = sin(x)
|
||||
|
||||
p = FramedPlot(
|
||||
title=<span class="st">"title!"</span>,
|
||||
xlabel=<span class="st">"</span>\\<span class="st">Sigma x^2_i"</span>,
|
||||
ylabel=<span class="st">"</span>\\<span class="st">Theta_i"</span>)
|
||||
|
||||
add(p, FillBetween(x, c, x, s))
|
||||
add(p, Curve(x, c, color=<span class="st">"red"</span>))
|
||||
add(p, Curve(x, s, color=<span class="st">"blue"</span>))
|
||||
display(p)</code></pre></div>
|
||||
<p><img src="figures/winston_sample_4_1.png" /> </p>
|
||||
</body>
|
||||
</html>
|
||||
|
|
@ -0,0 +1,82 @@
|
|||
|
||||
# Introducion to Weave
|
||||
|
||||
This a sample [Julia](http://julialang.org/) noweb document that can
|
||||
be executed using Weave. Output from code chunks and Winston
|
||||
plots will be included in the weaved document. You also need to install Pweave from Github in order to use Weave.
|
||||
|
||||
This documented can be turned into Pandoc markdown with captured
|
||||
result from Julia prompt.
|
||||
|
||||
~~~~{.julia}
|
||||
using Weave
|
||||
weave(Pkg.dir("Weave","examples","winston_sample.mdw"), plotlib="Winston")
|
||||
~~~~
|
||||
|
||||
## Terminal chunk
|
||||
|
||||
~~~~{.julia}
|
||||
julia> x = 1:10
|
||||
|
||||
1:10
|
||||
julia> d = Dict("Weave" => "testing")
|
||||
|
||||
Dict{String,String} with 1 entry:
|
||||
"Weave" => "testing"
|
||||
julia> y = [2, 4 ,8]
|
||||
3-element Array{Int64,1}:
|
||||
2
|
||||
4
|
||||
8
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
## Capturing figures
|
||||
|
||||
The figures and code can be included in the output.
|
||||
|
||||
~~~~{.julia}
|
||||
julia> using Winston
|
||||
|
||||
julia> t = linspace(0, 2*pi, 100)
|
||||
|
||||
100-element LinSpace{Float64}:
|
||||
0.0,0.0634665,0.126933,0.1904,0.253866,…,6.09279,6.15625,6.21972,6.28319
|
||||
julia> p = plot(t, sinc(t))
|
||||
Winston.FramedPlot(...)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
\
|
||||
|
||||
|
||||
|
||||
|
||||
You can also include a plot with caption and hide the code:
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
x = linspace(0, 3pi, 100)
|
||||
c = cos(x)
|
||||
s = sin(x)
|
||||
|
||||
p = FramedPlot(
|
||||
title="title!",
|
||||
xlabel="\\Sigma x^2_i",
|
||||
ylabel="\\Theta_i")
|
||||
|
||||
add(p, FillBetween(x, c, x, s))
|
||||
add(p, Curve(x, c, color="red"))
|
||||
add(p, Curve(x, s, color="blue"))
|
||||
display(p)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
\
|
||||
|
||||
|
|
@ -0,0 +1,111 @@
|
|||
% FIR filter design with Julia
|
||||
% Matti Pastell
|
||||
% 21th April 2016
|
||||
|
||||
# Introduction
|
||||
|
||||
This an example of a julia script that can be published using
|
||||
[Weave](http://mpastell.github.io/Weave.jl/latest/usage/).
|
||||
The script can be executed normally using Julia
|
||||
or published to HTML or pdf with Weave.
|
||||
Text is written in markdown in lines starting with "`#'` " and code
|
||||
is executed and results are included in the published document.
|
||||
|
||||
Notice that you don't need to define chunk options, but you can using
|
||||
`#+`. just before code e.g. `#+ term=True, caption='Fancy plots.'`.
|
||||
If you're viewing the published version have a look at the
|
||||
[source](FIR_design.jl) to see the markup.
|
||||
|
||||
|
||||
# FIR Filter Design
|
||||
|
||||
We'll implement lowpass, highpass and ' bandpass FIR filters. If
|
||||
you want to read more about DSP I highly recommend [The Scientist
|
||||
and Engineer's Guide to Digital Signal
|
||||
Processing](http://www.dspguide.com/) which is freely available
|
||||
online.
|
||||
|
||||
## Calculating frequency response
|
||||
|
||||
DSP.jl package doesn't (yet) have a method to calculate the
|
||||
the frequency response of a FIR filter so we define it:
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
using Gadfly, DSP
|
||||
|
||||
function FIRfreqz(b::Array, w = linspace(0, π, 1024))
|
||||
n = length(w)
|
||||
h = Array{Complex64}(n)
|
||||
sw = 0
|
||||
for i = 1:n
|
||||
for j = 1:length(b)
|
||||
sw += b[j]*exp(-im*w[i])^-j
|
||||
end
|
||||
h[i] = sw
|
||||
sw = 0
|
||||
end
|
||||
return h
|
||||
end
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
## Design Lowpass FIR filter
|
||||
|
||||
Designing a lowpass FIR filter is very simple to do with DSP.jl, all you
|
||||
need to do is to define the window length, cut off frequency and the
|
||||
window. We will define a lowpass filter with cut off frequency at 5Hz for a signal
|
||||
sampled at 20 Hz.
|
||||
We will use the Hamming window, which is defined as:
|
||||
$w(n) = \alpha - \beta\cos\frac{2\pi n}{N-1}$, where $\alpha=0.54$ and $\beta=0.46$
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
fs = 20
|
||||
f = digitalfilter(Lowpass(5, fs = fs), FIRWindow(hamming(61)))
|
||||
w = linspace(0, pi, 1024)
|
||||
h = FIRfreqz(f, w)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
## Plot the frequency and impulse response
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
h_db = log10(abs(h))
|
||||
ws = w/pi*(fs/2)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
The next code chunk is executed in term mode, see the [script](FIR_design.jl) for syntax.
|
||||
|
||||
~~~~{.julia}
|
||||
julia>
|
||||
plot(y = h_db, x = ws, Geom.line,
|
||||
Guide.xlabel("Frequency (Hz)"), Guide.ylabel("Magnitude (db)"))
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
\
|
||||
|
||||
|
||||
|
||||
And again with default options
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
h_phase = unwrap(-atan2(imag(h),real(h)))
|
||||
plot(y = h_phase, x = ws, Geom.line,
|
||||
Guide.xlabel("Frequency (Hz)"), Guide.ylabel("Phase (radians)"))
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
\
|
||||
|
||||
Binary file not shown.
|
|
@ -0,0 +1,109 @@
|
|||
|
||||
~~~~{.julia}
|
||||
julia> y= [2, 5, 12]
|
||||
3-element Array{Int64,1}:
|
||||
2
|
||||
5
|
||||
12
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
julia> y= [2, 5, 12]
|
||||
3-element Array{Int64,1}:
|
||||
2
|
||||
5
|
||||
12
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
x = [12, 10]
|
||||
println(y)
|
||||
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
[2,5,12]
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
println(x)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
[12,10]
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
x = [12, 10]
|
||||
println(y)
|
||||
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
[2,5,12]
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
println(x)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
[12,10]
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
y = 1:5
|
||||
println(y)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
1:5
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
y = 1:5
|
||||
println(y)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
1:5
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
Some text in the end
|
||||
|
|
@ -0,0 +1,146 @@
|
|||
|
||||
~~~~{.julia}
|
||||
julia> y= [2, 5, 12]
|
||||
3-element Array{Int64,1}:
|
||||
2
|
||||
5
|
||||
12
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
x = [12, 10]
|
||||
println(y)
|
||||
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
[2,5,12]
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
println(x)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
[12,10]
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~
|
||||
Results without code
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
~~~~
|
||||
[12,10]
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
y = randn(5)
|
||||
println("Don't eval, but show code")
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
y = 1:5
|
||||
println(y)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
1:5
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
a = "Don't print me"
|
||||
println(a)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
println("No markup for results.")
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
No markup for results.
|
||||
|
||||
|
||||
|
||||
|
||||
Test wrapping:
|
||||
|
||||
~~~~{.julia}
|
||||
println(collect(0:10:1000))
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
[0,10,20,30,40,50,60,70,80,90,100,110,120,130,140,150,160,170,180,190,200,2
|
||||
10,220,230,240,250,260,270,280,290,300,310,320,330,340,350,360,370,380,390,
|
||||
400,410,420,430,440,450,460,470,480,490,500,510,520,530,540,550,560,570,580
|
||||
,590,600,610,620,630,640,650,660,670,680,690,700,710,720,730,740,750,760,77
|
||||
0,780,790,800,810,820,830,840,850,860,870,880,890,900,910,920,930,940,950,9
|
||||
60,970,980,990,1000]
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
println(collect(0:10:1000))
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~[0,10,20,30,40,50,60,70,80,90,100,110,120,130,140,150,160,170,180,190,200,210,220,230,240,250,260,270,280,290,300,310,320,330,340,350,360,370,380,390,400,410,420,430,440,450,460,470,480,490,500,510,520,530,540,550,560,570,580,590,600,610,620,630,640,650,660,670,680,690,700,710,720,730,740,750,760,770,780,790,800,810,820,830,840,850,860,870,880,890,900,910,920,930,940,950,960,970,980,990,1000]
|
||||
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
println(collect(0:10:1000))
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
[0,10,20,30,40,50,60,70,80,90,100,110,120,130,140,150,160,17
|
||||
0,180,190,200,210,220,230,240,250,260,270,280,290,300,310,32
|
||||
0,330,340,350,360,370,380,390,400,410,420,430,440,450,460,47
|
||||
0,480,490,500,510,520,530,540,550,560,570,580,590,600,610,62
|
||||
0,630,640,650,660,670,680,690,700,710,720,730,740,750,760,77
|
||||
0,780,790,800,810,820,830,840,850,860,870,880,890,900,910,92
|
||||
0,930,940,950,960,970,980,990,1000]
|
||||
~~~~
|
||||
|
||||
|
||||
|
|
@ -0,0 +1,75 @@
|
|||
|
||||
|
||||
````julia
|
||||
using Gadfly
|
||||
x = linspace(0, 2π, 200)
|
||||
plot(x=x, y = sin(x), Geom.line)
|
||||
````
|
||||
|
||||
|
||||
![sin(x) function.][figures/gadfly_formats_test_sin_fun_1.png]
|
||||
|
||||
[figures/gadfly_formats_test_sin_fun_1.png]: figures/gadfly_formats_test_sin_fun_1.png
|
||||
|
||||
|
||||
|
||||
![cos(x) function.][figures/gadfly_formats_test_2_1.png]
|
||||
|
||||
[figures/gadfly_formats_test_2_1.png]: figures/gadfly_formats_test_2_1.png
|
||||
|
||||
|
||||
|
||||
![][figures/gadfly_formats_test_cos2_fun_1.png]
|
||||
|
||||
[figures/gadfly_formats_test_cos2_fun_1.png]: figures/gadfly_formats_test_cos2_fun_1.png
|
||||
|
||||
|
||||
|
||||
````julia
|
||||
julia> x = linspace(0, 2π, 200)
|
||||
|
||||
200-element LinSpace{Float64}:
|
||||
0.0,0.0315738,0.0631476,0.0947214,0.126295,…,6.18846,6.22004,6.25161,6.28319
|
||||
julia> plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
````
|
||||
|
||||
|
||||
![][figures/gadfly_formats_test_4_1.png]
|
||||
|
||||
[figures/gadfly_formats_test_4_1.png]: figures/gadfly_formats_test_4_1.png
|
||||
|
||||
````julia
|
||||
julia> y = 20
|
||||
|
||||
20
|
||||
julia> plot(x=x, y = cos(x), Geom.line)
|
||||
````
|
||||
|
||||
|
||||
![][figures/gadfly_formats_test_4_2.png]
|
||||
|
||||
[figures/gadfly_formats_test_4_2.png]: figures/gadfly_formats_test_4_2.png
|
||||
|
||||
|
||||
|
||||
````julia
|
||||
x = linspace(0, 2π, 200)
|
||||
plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
````
|
||||
|
||||
|
||||
![][figures/gadfly_formats_test_5_1.png]
|
||||
|
||||
[figures/gadfly_formats_test_5_1.png]: figures/gadfly_formats_test_5_1.png width=15cm
|
||||
|
||||
````julia
|
||||
y = 20
|
||||
plot(x=x, y = cos(x), Geom.line)
|
||||
````
|
||||
|
||||
|
||||
![][figures/gadfly_formats_test_5_2.png]
|
||||
|
||||
[figures/gadfly_formats_test_5_2.png]: figures/gadfly_formats_test_5_2.png width=15cm
|
||||
|
|
@ -0,0 +1,84 @@
|
|||
|
||||
|
||||
.. code-block:: julia
|
||||
|
||||
using Gadfly
|
||||
x = linspace(0, 2π, 200)
|
||||
plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
|
||||
|
||||
.. figure:: figures/gadfly_formats_test_sin_fun_1.png
|
||||
:width: 15 cm
|
||||
|
||||
sin(x) function.
|
||||
|
||||
|
||||
|
||||
|
||||
.. figure:: figures/gadfly_formats_test_2_1.png
|
||||
:width: 15 cm
|
||||
|
||||
cos(x) function.
|
||||
|
||||
|
||||
|
||||
|
||||
.. image:: figures/gadfly_formats_test_cos2_fun_1.png
|
||||
:width: 15 cm
|
||||
|
||||
|
||||
|
||||
|
||||
.. code-block:: julia
|
||||
|
||||
julia> x = linspace(0, 2π, 200)
|
||||
|
||||
200-element LinSpace{Float64}:
|
||||
0.0,0.0315738,0.0631476,0.0947214,0.126295,…,6.18846,6.22004,6.25161,6.28319
|
||||
julia> plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
|
||||
|
||||
|
||||
.. image:: figures/gadfly_formats_test_4_1.png
|
||||
:width: 15 cm
|
||||
|
||||
|
||||
.. code-block:: julia
|
||||
|
||||
julia> y = 20
|
||||
|
||||
20
|
||||
julia> plot(x=x, y = cos(x), Geom.line)
|
||||
|
||||
|
||||
|
||||
.. image:: figures/gadfly_formats_test_4_2.png
|
||||
:width: 15 cm
|
||||
|
||||
|
||||
|
||||
|
||||
.. code-block:: julia
|
||||
|
||||
x = linspace(0, 2π, 200)
|
||||
plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
|
||||
|
||||
|
||||
.. image:: figures/gadfly_formats_test_5_1.png
|
||||
:width: 15cm
|
||||
|
||||
|
||||
.. code-block:: julia
|
||||
|
||||
y = 20
|
||||
plot(x=x, y = cos(x), Geom.line)
|
||||
|
||||
|
||||
|
||||
.. image:: figures/gadfly_formats_test_5_2.png
|
||||
:width: 15cm
|
||||
|
||||
|
|
@ -0,0 +1,60 @@
|
|||
|
||||
|
||||
\begin{juliacode}
|
||||
using Gadfly
|
||||
x = linspace(0, 2π, 200)
|
||||
plot(x=x, y = sin(x), Geom.line)
|
||||
\end{juliacode}
|
||||
\begin{figure}[ht]
|
||||
\center
|
||||
\includegraphics[width=\linewidth]{figures/gadfly_formats_test_sin_fun_1.ps}
|
||||
\caption{sin(x) function.}
|
||||
\label{fig:sin_fun}
|
||||
\end{figure}
|
||||
|
||||
|
||||
|
||||
\begin{figure}[htpb]
|
||||
\center
|
||||
\includegraphics[width=\linewidth]{figures/gadfly_formats_test_2_1.ps}
|
||||
\caption{cos(x) function.}
|
||||
\end{figure}
|
||||
|
||||
|
||||
|
||||
\includegraphics[width=\linewidth]{figures/gadfly_formats_test_cos2_fun_1.ps}
|
||||
|
||||
|
||||
|
||||
\begin{juliaterm}
|
||||
julia> x = linspace(0, 2π, 200)
|
||||
|
||||
200-element LinSpace{Float64}:
|
||||
0.0,0.0315738,0.0631476,0.0947214,0.126295,…,6.18846,6.22004,6.25161,6.28319
|
||||
julia> plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
\end{juliaterm}
|
||||
\includegraphics[width=\linewidth]{figures/gadfly_formats_test_4_1.ps}
|
||||
|
||||
\begin{juliaterm}
|
||||
julia> y = 20
|
||||
|
||||
20
|
||||
julia> plot(x=x, y = cos(x), Geom.line)
|
||||
\end{juliaterm}
|
||||
\includegraphics[width=\linewidth]{figures/gadfly_formats_test_4_2.ps}
|
||||
|
||||
|
||||
|
||||
\begin{juliacode}
|
||||
x = linspace(0, 2π, 200)
|
||||
plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
\end{juliacode}
|
||||
\includegraphics[width=15cm]{figures/gadfly_formats_test_5_1.ps}
|
||||
|
||||
\begin{juliacode}
|
||||
y = 20
|
||||
plot(x=x, y = cos(x), Geom.line)
|
||||
\end{juliacode}
|
||||
\includegraphics[width=15cm]{figures/gadfly_formats_test_5_2.ps}
|
||||
|
|
@ -0,0 +1,82 @@
|
|||
|
||||
# Gadfly
|
||||
|
||||
````julia
|
||||
julia> using Gadfly
|
||||
|
||||
julia> x = linspace(0, 2π, 200)
|
||||
|
||||
200-element LinSpace{Float64}:
|
||||
0.0,0.0315738,0.0631476,0.0947214,0.126295,…,6.18846,6.22004,6.25161,6.28319
|
||||
julia> plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
````
|
||||
|
||||
|
||||
|
||||
|
||||
````julia
|
||||
julia> y = 20
|
||||
|
||||
20
|
||||
julia> plot(x=x, y = cos(x), Geom.line)
|
||||
````
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
````julia
|
||||
x = linspace(0, 200)
|
||||
println(x)
|
||||
````
|
||||
|
||||
|
||||
````
|
||||
linspace(0.0,200.0,50)
|
||||
````
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
````julia
|
||||
julia> using Gadfly
|
||||
|
||||
julia> x = linspace(0, 2π, 200)
|
||||
|
||||
200-element LinSpace{Float64}:
|
||||
0.0,0.0315738,0.0631476,0.0947214,0.126295,…,6.18846,6.22004,6.25161,6.28319
|
||||
julia> plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
````
|
||||
|
||||
|
||||
|
||||
|
||||
````julia
|
||||
julia> y = 20
|
||||
|
||||
20
|
||||
julia> plot(x=x, y = cos(x), Geom.line)
|
||||
````
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
````julia
|
||||
x = linspace(0, 200)
|
||||
println(x)
|
||||
````
|
||||
|
||||
|
||||
````
|
||||
linspace(0.0,200.0,50)
|
||||
````
|
||||
|
||||
|
||||
|
|
@ -0,0 +1,131 @@
|
|||
|
||||
|
||||
~~~~{.julia}
|
||||
using DataFrames
|
||||
df = DataFrame(letters = 'a':'z', numbers = 1:26)
|
||||
|
||||
df
|
||||
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
26×2 DataFrames.DataFrame
|
||||
│ Row │ letters │ numbers │
|
||||
├─────┼─────────┼─────────┤
|
||||
│ 1 │ 'a' │ 1 │
|
||||
│ 2 │ 'b' │ 2 │
|
||||
│ 3 │ 'c' │ 3 │
|
||||
│ 4 │ 'd' │ 4 │
|
||||
│ 5 │ 'e' │ 5 │
|
||||
│ 6 │ 'f' │ 6 │
|
||||
│ 7 │ 'g' │ 7 │
|
||||
│ 8 │ 'h' │ 8 │
|
||||
⋮
|
||||
│ 18 │ 'r' │ 18 │
|
||||
│ 19 │ 's' │ 19 │
|
||||
│ 20 │ 't' │ 20 │
|
||||
│ 21 │ 'u' │ 21 │
|
||||
│ 22 │ 'v' │ 22 │
|
||||
│ 23 │ 'w' │ 23 │
|
||||
│ 24 │ 'x' │ 24 │
|
||||
│ 25 │ 'y' │ 25 │
|
||||
│ 26 │ 'z' │ 26 │
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
z = 51
|
||||
display(df)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
26×2 DataFrames.DataFrame
|
||||
│ Row │ letters │ numbers │
|
||||
├─────┼─────────┼─────────┤
|
||||
│ 1 │ 'a' │ 1 │
|
||||
│ 2 │ 'b' │ 2 │
|
||||
│ 3 │ 'c' │ 3 │
|
||||
│ 4 │ 'd' │ 4 │
|
||||
│ 5 │ 'e' │ 5 │
|
||||
│ 6 │ 'f' │ 6 │
|
||||
│ 7 │ 'g' │ 7 │
|
||||
│ 8 │ 'h' │ 8 │
|
||||
⋮
|
||||
│ 18 │ 'r' │ 18 │
|
||||
│ 19 │ 's' │ 19 │
|
||||
│ 20 │ 't' │ 20 │
|
||||
│ 21 │ 'u' │ 21 │
|
||||
│ 22 │ 'v' │ 22 │
|
||||
│ 23 │ 'w' │ 23 │
|
||||
│ 24 │ 'x' │ 24 │
|
||||
│ 25 │ 'y' │ 25 │
|
||||
│ 26 │ 'z' │ 26 │
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
head(df)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
6×2 DataFrames.DataFrame
|
||||
│ Row │ letters │ numbers │
|
||||
├─────┼─────────┼─────────┤
|
||||
│ 1 │ 'a' │ 1 │
|
||||
│ 2 │ 'b' │ 2 │
|
||||
│ 3 │ 'c' │ 3 │
|
||||
│ 4 │ 'd' │ 4 │
|
||||
│ 5 │ 'e' │ 5 │
|
||||
│ 6 │ 'f' │ 6 │
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
julia> df
|
||||
26×2 DataFrames.DataFrame
|
||||
│ Row │ letters │ numbers │
|
||||
├─────┼─────────┼─────────┤
|
||||
│ 1 │ 'a' │ 1 │
|
||||
│ 2 │ 'b' │ 2 │
|
||||
│ 3 │ 'c' │ 3 │
|
||||
│ 4 │ 'd' │ 4 │
|
||||
│ 5 │ 'e' │ 5 │
|
||||
│ 6 │ 'f' │ 6 │
|
||||
│ 7 │ 'g' │ 7 │
|
||||
│ 8 │ 'h' │ 8 │
|
||||
⋮
|
||||
│ 18 │ 'r' │ 18 │
|
||||
│ 19 │ 's' │ 19 │
|
||||
│ 20 │ 't' │ 20 │
|
||||
│ 21 │ 'u' │ 21 │
|
||||
│ 22 │ 'v' │ 22 │
|
||||
│ 23 │ 'w' │ 23 │
|
||||
│ 24 │ 'x' │ 24 │
|
||||
│ 25 │ 'y' │ 25 │
|
||||
│ 26 │ 'z' │ 26 │
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
m = Base.Markdown.parse("**Some Markdown**")
|
||||
m
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
|
||||
**Some Markdown**
|
||||
|
||||
|
|
@ -0,0 +1,115 @@
|
|||
|
||||
|
||||
\begin{juliacode}
|
||||
using DataFrames
|
||||
df = DataFrame(letters = 'a':'z', numbers = 1:26)
|
||||
|
||||
df
|
||||
|
||||
\end{juliacode}
|
||||
\begin{juliaout}
|
||||
26×2 DataFrames.DataFrame
|
||||
│ Row │ letters │ numbers │
|
||||
├─────┼─────────┼─────────┤
|
||||
│ 1 │ 'a' │ 1 │
|
||||
│ 2 │ 'b' │ 2 │
|
||||
│ 3 │ 'c' │ 3 │
|
||||
│ 4 │ 'd' │ 4 │
|
||||
│ 5 │ 'e' │ 5 │
|
||||
│ 6 │ 'f' │ 6 │
|
||||
│ 7 │ 'g' │ 7 │
|
||||
│ 8 │ 'h' │ 8 │
|
||||
⋮
|
||||
│ 18 │ 'r' │ 18 │
|
||||
│ 19 │ 's' │ 19 │
|
||||
│ 20 │ 't' │ 20 │
|
||||
│ 21 │ 'u' │ 21 │
|
||||
│ 22 │ 'v' │ 22 │
|
||||
│ 23 │ 'w' │ 23 │
|
||||
│ 24 │ 'x' │ 24 │
|
||||
│ 25 │ 'y' │ 25 │
|
||||
│ 26 │ 'z' │ 26 │
|
||||
\end{juliaout}
|
||||
|
||||
\begin{juliacode}
|
||||
z = 51
|
||||
display(df)
|
||||
\end{juliacode}
|
||||
\begin{juliaout}
|
||||
26×2 DataFrames.DataFrame
|
||||
│ Row │ letters │ numbers │
|
||||
├─────┼─────────┼─────────┤
|
||||
│ 1 │ 'a' │ 1 │
|
||||
│ 2 │ 'b' │ 2 │
|
||||
│ 3 │ 'c' │ 3 │
|
||||
│ 4 │ 'd' │ 4 │
|
||||
│ 5 │ 'e' │ 5 │
|
||||
│ 6 │ 'f' │ 6 │
|
||||
│ 7 │ 'g' │ 7 │
|
||||
│ 8 │ 'h' │ 8 │
|
||||
⋮
|
||||
│ 18 │ 'r' │ 18 │
|
||||
│ 19 │ 's' │ 19 │
|
||||
│ 20 │ 't' │ 20 │
|
||||
│ 21 │ 'u' │ 21 │
|
||||
│ 22 │ 'v' │ 22 │
|
||||
│ 23 │ 'w' │ 23 │
|
||||
│ 24 │ 'x' │ 24 │
|
||||
│ 25 │ 'y' │ 25 │
|
||||
│ 26 │ 'z' │ 26 │
|
||||
\end{juliaout}
|
||||
|
||||
|
||||
|
||||
\begin{juliacode}
|
||||
head(df)
|
||||
\end{juliacode}
|
||||
\begin{juliaout}
|
||||
6×2 DataFrames.DataFrame
|
||||
│ Row │ letters │ numbers │
|
||||
├─────┼─────────┼─────────┤
|
||||
│ 1 │ 'a' │ 1 │
|
||||
│ 2 │ 'b' │ 2 │
|
||||
│ 3 │ 'c' │ 3 │
|
||||
│ 4 │ 'd' │ 4 │
|
||||
│ 5 │ 'e' │ 5 │
|
||||
│ 6 │ 'f' │ 6 │
|
||||
\end{juliaout}
|
||||
|
||||
|
||||
|
||||
\begin{juliaterm}
|
||||
julia> df
|
||||
26×2 DataFrames.DataFrame
|
||||
│ Row │ letters │ numbers │
|
||||
├─────┼─────────┼─────────┤
|
||||
│ 1 │ 'a' │ 1 │
|
||||
│ 2 │ 'b' │ 2 │
|
||||
│ 3 │ 'c' │ 3 │
|
||||
│ 4 │ 'd' │ 4 │
|
||||
│ 5 │ 'e' │ 5 │
|
||||
│ 6 │ 'f' │ 6 │
|
||||
│ 7 │ 'g' │ 7 │
|
||||
│ 8 │ 'h' │ 8 │
|
||||
⋮
|
||||
│ 18 │ 'r' │ 18 │
|
||||
│ 19 │ 's' │ 19 │
|
||||
│ 20 │ 't' │ 20 │
|
||||
│ 21 │ 'u' │ 21 │
|
||||
│ 22 │ 'v' │ 22 │
|
||||
│ 23 │ 'w' │ 23 │
|
||||
│ 24 │ 'x' │ 24 │
|
||||
│ 25 │ 'y' │ 25 │
|
||||
│ 26 │ 'z' │ 26 │
|
||||
\end{juliaterm}
|
||||
|
||||
|
||||
|
||||
|
||||
\begin{juliacode}
|
||||
m = Base.Markdown.parse("**Some Markdown**")
|
||||
m
|
||||
\end{juliacode}
|
||||
|
||||
\textbf{Some Markdown}
|
||||
|
||||
Binary file not shown.
|
After Width: | Height: | Size: 62 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 28 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 28 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 31 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 31 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 34 KiB |
Binary file not shown.
|
After Width: | Height: | Size: 31 KiB |
|
|
@ -0,0 +1,64 @@
|
|||
|
||||
|
||||
[source,julia]
|
||||
--------------------------------------
|
||||
using Gadfly
|
||||
x = linspace(0, 2π, 200)
|
||||
plot(x=x, y = sin(x), Geom.line)
|
||||
--------------------------------------
|
||||
|
||||
|
||||
image::figures/gadfly_formats_test_sin_fun_1.png[width=600,title="sin(x) function."]
|
||||
|
||||
|
||||
image::figures/gadfly_formats_test_2_1.png[width=600,title="cos(x) function."]
|
||||
|
||||
|
||||
image::figures/gadfly_formats_test_cos2_fun_1.png[width=600]
|
||||
|
||||
|
||||
|
||||
[source,julia]
|
||||
--------------------------------------
|
||||
julia> x = linspace(0, 2π, 200)
|
||||
|
||||
200-element LinSpace{Float64}:
|
||||
0.0,0.0315738,0.0631476,0.0947214,0.126295,…,6.18846,6.22004,6.25161,6.28319
|
||||
julia> plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
--------------------------------------
|
||||
|
||||
|
||||
image::figures/gadfly_formats_test_4_1.png[width=600]
|
||||
|
||||
[source,julia]
|
||||
--------------------------------------
|
||||
julia> y = 20
|
||||
|
||||
20
|
||||
julia> plot(x=x, y = cos(x), Geom.line)
|
||||
--------------------------------------
|
||||
|
||||
|
||||
image::figures/gadfly_formats_test_4_2.png[width=600]
|
||||
|
||||
|
||||
|
||||
[source,julia]
|
||||
--------------------------------------
|
||||
x = linspace(0, 2π, 200)
|
||||
plot(x=x, y = sin(x), Geom.line)
|
||||
|
||||
--------------------------------------
|
||||
|
||||
|
||||
image::figures/gadfly_formats_test_5_1.png[width=15cm]
|
||||
|
||||
[source,julia]
|
||||
--------------------------------------
|
||||
y = 20
|
||||
plot(x=x, y = cos(x), Geom.line)
|
||||
--------------------------------------
|
||||
|
||||
|
||||
image::figures/gadfly_formats_test_5_2.png[width=15cm]
|
||||
Binary file not shown.
|
After Width: | Height: | Size: 3.0 KiB |
Binary file not shown.
Binary file not shown.
|
After Width: | Height: | Size: 18 KiB |
Binary file not shown.
Binary file not shown.
|
After Width: | Height: | Size: 45 KiB |
Binary file not shown.
Binary file not shown.
|
After Width: | Height: | Size: 45 KiB |
Binary file not shown.
Binary file not shown.
|
After Width: | Height: | Size: 47 KiB |
Binary file not shown.
Binary file not shown.
|
After Width: | Height: | Size: 27 KiB |
|
|
@ -0,0 +1,80 @@
|
|||
|
||||
|
||||
~~~~{.julia}
|
||||
using Plots
|
||||
pyplot()
|
||||
x = linspace(0, 2*pi)
|
||||
println(x)
|
||||
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
~~~~
|
||||
linspace(0.0,6.283185307179586,50)
|
||||
~~~~
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
p = plot(x, sin(x), size =(900,300))
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
\
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
julia> plot(x, sin(x))
|
||||
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
\
|
||||
|
||||
\
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
plot(rand(100) / 3,reg=true,fill=(0,:green))
|
||||
scatter!(rand(100),markersize=6,c=:orange)
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
\
|
||||
|
||||
\
|
||||
|
||||
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
julia> plot(rand(100) / 3,reg=true,fill=(0,:green))
|
||||
|
||||
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
\
|
||||
|
||||
|
||||
~~~~{.julia}
|
||||
julia> scatter!(rand(100),markersize=6,c=:orange)
|
||||
|
||||
~~~~~~~~~~~~~
|
||||
|
||||
|
||||
\
|
||||
|
||||
\
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
|
@ -0,0 +1,58 @@
|
|||
|
||||
|
||||
\begin{juliacode}
|
||||
using Plots
|
||||
pyplot()
|
||||
x = linspace(0, 2*pi)
|
||||
println(x)
|
||||
|
||||
\end{juliacode}
|
||||
\begin{juliaout}
|
||||
linspace(0.0,6.283185307179586,50)
|
||||
\end{juliaout}
|
||||
|
||||
\begin{juliacode}
|
||||
p = plot(x, sin(x), size =(900,300))
|
||||
\end{juliacode}
|
||||
|
||||
|
||||
|
||||
|
||||
\begin{juliaterm}
|
||||
julia> plot(x, sin(x))
|
||||
|
||||
\end{juliaterm}
|
||||
\includegraphics[width=\linewidth]{figures/plotsjl_test_2_1.pdf}
|
||||
|
||||
|
||||
|
||||
\begin{juliacode}
|
||||
plot(rand(100) / 3,reg=true,fill=(0,:green))
|
||||
scatter!(rand(100),markersize=6,c=:orange)
|
||||
\end{juliacode}
|
||||
\includegraphics[width=\linewidth]{figures/plotsjl_test_3_1.pdf}
|
||||
|
||||
|
||||
|
||||
\begin{juliaterm}
|
||||
julia> plot(rand(100) / 3,reg=true,fill=(0,:green))
|
||||
|
||||
|
||||
\end{juliaterm}
|
||||
\includegraphics[width=\linewidth]{figures/plotsjl_test_4_1.pdf}
|
||||
|
||||
\begin{juliaterm}
|
||||
julia> scatter!(rand(100),markersize=6,c=:orange)
|
||||
|
||||
\end{juliaterm}
|
||||
\includegraphics[width=\linewidth]{figures/plotsjl_test_4_2.pdf}
|
||||
|
||||
|
||||
|
||||
|
||||
\begin{figure}[htpb]
|
||||
\center
|
||||
\includegraphics[width=\linewidth]{figures/plotsjl_test_random_1.pdf}
|
||||
\caption{A random walk.}
|
||||
\label{fig:random}
|
||||
\end{figure}
|
||||
|
|
@ -0,0 +1,69 @@
|
|||
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
||||
<html xmlns="http://www.w3.org/1999/xhtml">
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
<meta http-equiv="Content-Style-Type" content="text/css" />
|
||||
<meta name="generator" content="pandoc" />
|
||||
<title></title>
|
||||
<style type="text/css">code{white-space: pre;}</style>
|
||||
<style type="text/css">
|
||||
div.sourceCode { overflow-x: auto; }
|
||||
table.sourceCode, tr.sourceCode, td.lineNumbers, td.sourceCode {
|
||||
margin: 0; padding: 0; vertical-align: baseline; border: none; }
|
||||
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|
||||
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|
||||
td.sourceCode { padding-left: 5px; }
|
||||
code > span.kw { color: #007020; font-weight: bold; } /* Keyword */
|
||||
code > span.dt { color: #902000; } /* DataType */
|
||||
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|
||||
code > span.bn { color: #40a070; } /* BaseN */
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code > span.fl { color: #40a070; } /* Float */
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||||
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|
||||
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|
||||
code > span.al { color: #ff0000; font-weight: bold; } /* Alert */
|
||||
code > span.fu { color: #06287e; } /* Function */
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code > span.wa { color: #60a0b0; font-weight: bold; font-style: italic; } /* Warning */
|
||||
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|
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|
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code > span.ss { color: #bb6688; } /* SpecialString */
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code > span.im { } /* Import */
|
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code > span.va { color: #19177c; } /* Variable */
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||||
code > span.cf { color: #007020; font-weight: bold; } /* ControlFlow */
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||||
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</style>
|
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</head>
|
||||
<body>
|
||||
<div class="sourceCode"><pre class="sourceCode julia"><code class="sourceCode julia">using Plots
|
||||
pyplot()
|
||||
x = linspace(<span class="fl">0</span>, <span class="fl">2</span>*pi)
|
||||
println(x)</code></pre></div>
|
||||
<pre><code>linspace(0.0,6.283185307179586,50)</code></pre>
|
||||
<div class="sourceCode"><pre class="sourceCode julia"><code class="sourceCode julia">p = plot(x = x, y = sin(x), size =(<span class="fl">900</span>,<span class="fl">300</span>))</code></pre></div>
|
||||
<div class="sourceCode"><pre class="sourceCode julia"><code class="sourceCode julia">julia> plot(x = x, y = sin(x))</code></pre></div>
|
||||
<p><img src="figures/plotsjl_test_2_1.png" /> </p>
|
||||
<div class="sourceCode"><pre class="sourceCode julia"><code class="sourceCode julia">plot(rand(<span class="fl">100</span>) / <span class="fl">3</span>,reg=true,fill=(<span class="fl">0</span>,:green))
|
||||
scatter!(rand(<span class="fl">100</span>),markersize=<span class="fl">6</span>,c=:orange)</code></pre></div>
|
||||
<p><img src="figures/plotsjl_test_3_1.png" /> </p>
|
||||
<div class="sourceCode"><pre class="sourceCode julia"><code class="sourceCode julia">julia> plot(rand(<span class="fl">100</span>) / <span class="fl">3</span>,reg=true,fill=(<span class="fl">0</span>,:green))
|
||||
</code></pre></div>
|
||||
<p><img src="figures/plotsjl_test_4_1.png" /> </p>
|
||||
<div class="sourceCode"><pre class="sourceCode julia"><code class="sourceCode julia">julia> scatter!(rand(<span class="fl">100</span>),markersize=<span class="fl">6</span>,c=:orange)</code></pre></div>
|
||||
<p><img src="figures/plotsjl_test_4_2.png" /> </p>
|
||||
<div class="figure">
|
||||
<img src="figures/plotsjl_test_random_1.png" alt="A random walk." />
|
||||
<p class="caption">A random walk.</p>
|
||||
</div>
|
||||
</body>
|
||||
</html>
|
||||
|
|
@ -0,0 +1,6 @@
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{
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|
@ -0,0 +1,708 @@
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{
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{
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||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"# FIR filter design with Julia\n",
|
||||
"**Matti Pastell**\n",
|
||||
"\n",
|
||||
"\n",
|
||||
"# Introduction\n",
|
||||
"\n",
|
||||
"This an example of a julia script that can be published using\n",
|
||||
"[Weave](http://mpastell.github.io/Weave.jl/latest/usage/).\n",
|
||||
"The script can be executed normally using Julia\n",
|
||||
"or published to HTML or pdf with Weave.\n",
|
||||
"Text is written in markdown in lines starting with \"`#'` \" and code\n",
|
||||
"is executed and results are included in the published document.\n",
|
||||
"\n",
|
||||
"Notice that you don't need to define chunk options, but you can using\n",
|
||||
"`#+`. just before code e.g. `#+ term=True, caption='Fancy plots.'`.\n",
|
||||
"If you're viewing the published version have a look at the\n",
|
||||
"[source](FIR_design.jl) to see the markup.\n",
|
||||
"\n",
|
||||
"\n",
|
||||
"# FIR Filter Design\n",
|
||||
"\n",
|
||||
"We'll implement lowpass, highpass and ' bandpass FIR filters. If\n",
|
||||
"you want to read more about DSP I highly recommend [The Scientist\n",
|
||||
"and Engineer's Guide to Digital Signal\n",
|
||||
"Processing](http://www.dspguide.com/) which is freely available\n",
|
||||
"online.\n",
|
||||
"\n",
|
||||
"## Calculating frequency response\n",
|
||||
"\n",
|
||||
"DSP.jl package doesn't (yet) have a method to calculate the\n",
|
||||
"the frequency response of a FIR filter so we define it:"
|
||||
]
|
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},
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"cell_type": "code",
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||||
"name": "stderr",
|
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"output_type": "stream",
|
||||
"text": [
|
||||
"INFO: Precompiling module DSP.\n",
|
||||
"INFO: Recompiling stale cache file C:\\Users\\mpast\\.julia\\lib\\v0.5\\GR.ji for module GR.\n"
|
||||
]
|
||||
},
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|
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]
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||||
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"metadata": {},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"using Plots, DSP\n",
|
||||
"glvisualize()\n",
|
||||
"\n",
|
||||
"function FIRfreqz(b::Array, w = linspace(0, π, 1024))\n",
|
||||
" n = length(w)\n",
|
||||
" h = Array{Complex64}(n)\n",
|
||||
" sw = 0\n",
|
||||
" for i = 1:n\n",
|
||||
" for j = 1:length(b)\n",
|
||||
" sw += b[j]*exp(-im*w[i])^-j\n",
|
||||
" end\n",
|
||||
" h[i] = sw\n",
|
||||
" sw = 0\n",
|
||||
" end\n",
|
||||
" return h\n",
|
||||
"end"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Design Lowpass FIR filter\n",
|
||||
"\n",
|
||||
"Designing a lowpass FIR filter is very simple to do with DSP.jl, all you\n",
|
||||
"need to do is to define the window length, cut off frequency and the\n",
|
||||
"window. We will define a lowpass filter with cut off frequency at 5Hz for a signal\n",
|
||||
"sampled at 20 Hz.\n",
|
||||
"We will use the Hamming window, which is defined as:\n",
|
||||
"$w(n) = \\alpha - \\beta\\cos\\frac{2\\pi n}{N-1}$, where $\\alpha=0.54$ and $\\beta=0.46$"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 2,
|
||||
"metadata": {
|
||||
"collapsed": true
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"fs = 20\n",
|
||||
"f = digitalfilter(Lowpass(5, fs = fs), FIRWindow(hamming(61)))\n",
|
||||
"w = linspace(0, pi, 1024)\n",
|
||||
"h = FIRfreqz(f, w);"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "markdown",
|
||||
"metadata": {},
|
||||
"source": [
|
||||
"## Plot the frequency and impulse response"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 3,
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||||
"metadata": {
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"collapsed": false
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||||
},
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"outputs": [
|
||||
{
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"data": {
|
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"text/plain": [
|
||||
"1024-element LinSpace{Float64}:\n",
|
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" 0.0,0.00977517,0.0195503,0.0293255,…,9.9609,9.97067,9.98045,9.99022,10.0"
|
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]
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||||
}
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||||
],
|
||||
"source": [
|
||||
"h_db = log10(abs(h))\n",
|
||||
"ws = w/pi*(fs/2)"
|
||||
]
|
||||
},
|
||||
{
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|
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"</g>\n",
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"<text style=\"fill:#00002d; fill-opacity:1; font-family:Arial,Helvetica Neue,Helvetica,sans-serif; font-size:12; text-anchor:end;\" transform=\"rotate(0, 35.7926, 139.215)\" x=\"35.7926\" y=\"139.215\">-2</text>\n",
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"</g>\n",
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"<text style=\"fill:#00002d; fill-opacity:1; font-family:Arial,Helvetica Neue,Helvetica,sans-serif; font-size:12; text-anchor:end;\" transform=\"rotate(0, 35.7926, 8.46833)\" x=\"35.7926\" y=\"8.46833\">0</text>\n",
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"</g>\n",
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"<g clip-path=\"url(#clip00)\">\n",
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"<text style=\"fill:#00002d; fill-opacity:1; font-family:Arial,Helvetica Neue,Helvetica,sans-serif; font-size:16; text-anchor:middle;\" transform=\"rotate(-90, 14.4, 186.806)\" x=\"14.4\" y=\"186.806\">Magnitude (db)</text>\n",
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" 42.4576,3.97755 43.0041,3.97932 43.5506,3.9812 44.0971,3.98316 44.6436,3.98519 45.1901,3.98729 45.7366,3.98942 46.2831,3.99157 46.8296,3.99372 47.3761,3.99585 \n",
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" 47.9226,3.99795 48.4691,3.99999 49.0156,4.00197 49.5621,4.00386 50.1086,4.00564 50.6551,4.00731 51.2016,4.00885 51.7481,4.01024 52.2946,4.01147 52.8411,4.01253 \n",
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" 53.3876,4.01342 53.9341,4.01412 54.4806,4.01464 55.0271,4.01495 55.5736,4.01507 56.1201,4.01499 56.6666,4.01471 57.2131,4.01424 57.7596,4.01357 58.3061,4.01272 \n",
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" 58.8526,4.01169 59.3991,4.01048 59.9456,4.00912 60.4921,4.0076 61.0386,4.00595 61.5851,4.00418 62.1316,4.0023 62.6781,4.00032 63.2246,3.99828 63.7711,3.99617 \n",
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" 64.3176,3.99403 64.8641,3.99186 65.4106,3.98968 65.9571,3.98753 66.5036,3.98541 67.0501,3.98334 67.5966,3.98133 68.1431,3.97941 68.6896,3.9776 69.2361,3.9759 \n",
|
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" 69.7826,3.97434 70.3291,3.97291 70.8756,3.97165 71.4221,3.97056 71.9686,3.96964 72.5151,3.96891 73.0616,3.96837 73.6081,3.96803 74.1546,3.96789 74.7011,3.96795 \n",
|
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" 75.2476,3.96821 75.7941,3.96867 76.3406,3.96933 76.8871,3.97018 77.4336,3.97121 77.9801,3.97241 78.5266,3.97378 79.0731,3.9753 79.6196,3.97697 80.1661,3.97876 \n",
|
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" 80.7126,3.98066 81.2591,3.98266 81.8056,3.98474 82.3521,3.98688 82.8986,3.98906 83.4451,3.99127 83.9916,3.99348 84.5381,3.99568 85.0846,3.99785 85.6311,3.99998 \n",
|
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" 86.1776,4.00203 86.7241,4.004 87.2706,4.00587 87.8171,4.00762 88.3636,4.00923 88.9101,4.0107 89.4567,4.01201 90.0032,4.01315 90.5497,4.0141 91.0962,4.01487 \n",
|
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" 91.6427,4.01545 92.1892,4.01581 92.7357,4.01598 93.2822,4.01594 93.8287,4.01569 94.3752,4.01524 94.9217,4.01458 95.4682,4.01373 96.0147,4.01269 96.5612,4.01147 \n",
|
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" 97.1077,4.01008 97.6542,4.00853 98.2007,4.00683 98.7472,4.005 99.2937,4.00306 99.8402,4.00101 100.387,3.99888 100.933,3.99668 101.48,3.99444 102.026,3.99217 \n",
|
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" 102.573,3.98989 103.119,3.98762 103.666,3.98538 104.212,3.98319 104.759,3.98107 105.305,3.97903 105.852,3.97709 106.398,3.97528 106.945,3.9736 107.491,3.97207 \n",
|
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" 108.038,3.9707 108.584,3.96951 109.131,3.9685 109.677,3.96769 110.224,3.96708 110.77,3.96668 111.317,3.96649 111.863,3.96651 112.41,3.96674 112.956,3.96719 \n",
|
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" 113.503,3.96785 114.049,3.96871 114.596,3.96976 115.142,3.97101 115.689,3.97243 116.235,3.97402 116.782,3.97576 117.328,3.97765 117.875,3.97966 118.421,3.98177 \n",
|
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" 118.968,3.98397 119.514,3.98625 120.061,3.98858 120.607,3.99093 121.154,3.99331 121.7,3.99567 122.247,3.998 122.793,4.00029 123.34,4.00251 123.886,4.00464 \n",
|
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" 124.433,4.00667 124.979,4.00858 125.526,4.01035 126.072,4.01196 126.619,4.01341 127.165,4.01467 127.712,4.01574 128.258,4.01661 128.805,4.01727 129.351,4.01772 \n",
|
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" 129.898,4.01794 130.444,4.01794 130.991,4.01772 131.537,4.01727 132.084,4.0166 132.63,4.01573 133.177,4.01464 133.723,4.01335 134.27,4.01187 134.816,4.01022 \n",
|
||||
" 135.363,4.00841 135.909,4.00645 136.456,4.00435 137.002,4.00214 137.549,3.99983 138.095,3.99745 138.642,3.99501 139.188,3.99254 139.735,3.99005 140.281,3.98756 \n",
|
||||
" 140.828,3.9851 141.374,3.98269 141.921,3.98035 142.467,3.9781 143.014,3.97595 143.56,3.97393 144.107,3.97206 144.653,3.97034 145.2,3.9688 145.746,3.96745 \n",
|
||||
" 146.293,3.9663 146.839,3.96537 147.386,3.96465 147.932,3.96415 148.479,3.9639 149.025,3.96387 149.572,3.96409 150.118,3.96454 150.665,3.96522 151.211,3.96612 \n",
|
||||
" 151.758,3.96725 152.304,3.96859 152.851,3.97013 153.397,3.97186 153.944,3.97376 154.49,3.97582 155.037,3.97803 155.583,3.98036 156.13,3.98279 156.676,3.98531 \n",
|
||||
" 157.223,3.98789 157.769,3.99052 158.316,3.99316 158.862,3.9958 159.409,3.99842 159.955,4.00099 160.502,4.00348 161.048,4.00589 161.595,4.00819 162.141,4.01036 \n",
|
||||
" 162.688,4.01237 163.234,4.01422 163.781,4.01588 164.327,4.01734 164.874,4.01859 165.42,4.01962 165.967,4.0204 166.513,4.02096 167.06,4.02125 167.606,4.02131 \n",
|
||||
" 168.153,4.0211 168.699,4.02065 169.246,4.01995 169.792,4.019 170.339,4.01782 170.885,4.0164 171.432,4.01478 171.978,4.01295 172.525,4.01092 173.071,4.00873 \n",
|
||||
" 173.618,4.00638 174.164,4.0039 174.711,4.0013 175.257,3.99861 175.804,3.99585 176.35,3.99303 176.897,3.9902 177.443,3.98736 177.99,3.98455 178.536,3.98179 \n",
|
||||
" 179.083,3.9791 179.629,3.97651 180.176,3.97403 180.722,3.97169 181.269,3.96951 181.815,3.96751 182.362,3.9657 182.908,3.96411 183.455,3.96275 184.001,3.96162 \n",
|
||||
" 184.548,3.96075 185.094,3.96014 185.641,3.95979 186.187,3.95971 186.734,3.95989 187.28,3.96035 187.827,3.96109 188.373,3.96208 188.92,3.96333 189.466,3.96482 \n",
|
||||
" 190.013,3.96655 190.559,3.96851 191.106,3.97066 191.652,3.97301 192.199,3.97553 192.745,3.97819 193.292,3.98099 193.838,3.98388 194.385,3.98686 194.931,3.98989 \n",
|
||||
" 195.478,3.99295 196.024,3.99602 196.571,3.99906 197.117,4.00205 197.664,4.00497 198.21,4.00779 198.757,4.01049 199.303,4.01304 199.85,4.01542 200.396,4.01761 \n",
|
||||
" 200.943,4.01959 201.489,4.02133 202.036,4.02284 202.582,4.02409 203.129,4.02506 203.675,4.02576 204.222,4.02617 204.768,4.02629 205.315,4.02611 205.861,4.02564 \n",
|
||||
" 206.408,4.02488 206.954,4.02383 207.501,4.0225 208.047,4.02091 208.594,4.01905 209.14,4.01696 209.687,4.01464 210.233,4.01212 210.78,4.00941 211.326,4.00654 \n",
|
||||
" 211.873,4.00353 212.419,4.0004 212.966,3.99719 213.512,3.99392 214.059,3.99061 214.605,3.9873 215.152,3.98401 215.698,3.98078 216.245,3.97762 216.791,3.97456 \n",
|
||||
" 217.338,3.97165 217.884,3.96888 218.431,3.96631 218.977,3.96393 219.524,3.96178 220.07,3.95987 220.617,3.95824 221.163,3.95687 221.71,3.95579 222.256,3.95502 \n",
|
||||
" 222.803,3.95455 223.349,3.95439 223.896,3.95455 224.442,3.95502 224.989,3.9558 225.535,3.95689 226.082,3.95827 226.628,3.95995 227.175,3.96189 227.721,3.96408 \n",
|
||||
" 228.268,3.96652 228.814,3.96918 229.361,3.97203 229.907,3.97505 230.454,3.97822 231,3.9815 231.547,3.98488 232.093,3.98832 232.64,3.99179 233.186,3.99527 \n",
|
||||
" 233.733,3.99871 234.279,4.00211 234.826,4.00541 235.372,4.00861 235.919,4.01166 236.465,4.01454 237.012,4.01723 237.558,4.0197 238.105,4.02194 238.651,4.02392 \n",
|
||||
" 239.198,4.02563 239.744,4.02705 240.291,4.02818 240.837,4.02899 241.384,4.0295 241.93,4.02969 242.477,4.02956 243.023,4.02912 243.57,4.02838 244.116,4.02733 \n",
|
||||
" 244.663,4.026 245.209,4.0244 245.756,4.02253 246.302,4.02044 246.849,4.01812 247.395,4.01561 247.942,4.01293 248.488,4.01011 249.035,4.00717 249.581,4.00415 \n",
|
||||
" 250.128,4.00107 250.674,3.99795 251.221,3.99485 251.767,3.99176 252.314,3.98874 252.86,3.9858 253.407,3.98297 253.953,3.98027 254.5,3.97773 255.046,3.97536 \n",
|
||||
" 255.593,3.97319 256.139,3.97123 256.686,3.96949 257.232,3.96797 257.779,3.96669 258.325,3.96565 258.872,3.96484 259.418,3.96427 259.965,3.96392 260.511,3.96378 \n",
|
||||
" 261.058,3.96383 261.604,3.96407 262.151,3.96446 262.697,3.96499 263.244,3.96562 263.79,3.96633 264.337,3.96709 264.883,3.96786 265.43,3.96862 265.976,3.96932 \n",
|
||||
" 266.523,3.96994 267.069,3.97044 267.616,3.9708 268.162,3.97097 268.709,3.97094 269.255,3.97068 269.802,3.97016 270.348,3.96938 270.895,3.96833 271.441,3.96699 \n",
|
||||
" 271.988,3.96537 272.534,3.96349 273.081,3.96136 273.627,3.95901 274.174,3.95647 274.72,3.9538 275.267,3.95105 275.813,3.94829 276.36,3.9456 276.906,3.94308 \n",
|
||||
" 277.453,3.94084 277.999,3.93898 278.546,3.93766 279.092,3.93701 279.639,3.9372 280.185,3.9384 280.732,3.9408 281.278,3.94461 281.825,3.95003 282.371,3.95732 \n",
|
||||
" 282.918,3.9667 283.464,3.97844 284.011,3.9928 284.557,4.01008 285.104,4.03057 285.65,4.05457 286.197,4.08241 286.743,4.11442 287.29,4.15094 287.836,4.19231 \n",
|
||||
" 288.383,4.23891 288.929,4.29109 289.476,4.34923 290.022,4.41372 290.569,4.48495 291.115,4.56331 291.662,4.64921 292.208,4.74304 292.755,4.84523 293.301,4.95619 \n",
|
||||
" 293.848,5.07634 294.394,5.20609 294.941,5.34587 295.487,5.49611 296.034,5.65724 296.58,5.82968 297.127,6.01386 297.673,6.21021 298.22,6.41917 298.766,6.64116 \n",
|
||||
" 299.313,6.87662 299.86,7.12596 300.406,7.38964 300.953,7.66808 301.499,7.9617 302.046,8.27093 302.592,8.59621 303.139,8.93797 303.685,9.29663 304.232,9.67263 \n",
|
||||
" 304.778,10.0664 305.325,10.4783 305.871,10.9089 306.418,11.3586 306.964,11.8277 307.511,12.3168 308.057,12.8263 308.604,13.3566 309.15,13.9081 309.697,14.4813 \n",
|
||||
" 310.243,15.0767 310.79,15.6948 311.336,16.3359 311.883,17.0005 312.429,17.6893 312.976,18.4025 313.522,19.1407 314.069,19.9044 314.615,20.6942 315.162,21.5105 \n",
|
||||
" 315.708,22.3539 316.255,23.225 316.801,24.1242 317.348,25.0522 317.894,26.0095 318.441,26.9969 318.987,28.0148 319.534,29.064 320.08,30.1452 320.627,31.259 \n",
|
||||
" 321.173,32.4061 321.72,33.5874 322.266,34.8037 322.813,36.0556 323.359,37.3442 323.906,38.6702 324.452,40.0347 324.999,41.4386 325.545,42.883 326.092,44.369 \n",
|
||||
" 326.638,45.8977 327.185,47.4703 327.731,49.0882 328.278,50.7527 328.824,52.4653 329.371,54.2275 329.917,56.041 330.464,57.9076 331.01,59.8292 331.557,61.8079 \n",
|
||||
" 332.103,63.8459 332.65,65.9455 333.196,68.1095 333.743,70.3406 334.289,72.6419 334.836,75.017 335.382,77.4694 335.929,80.0034 336.475,82.6237 337.022,85.3353 \n",
|
||||
" 337.568,88.144 338.115,91.0565 338.661,94.0803 339.208,97.2238 339.754,100.497 340.301,103.911 340.847,107.481 341.394,111.221 341.94,115.153 342.487,119.299 \n",
|
||||
" 343.033,123.691 343.58,128.366 344.126,133.376 344.673,138.786 345.219,144.69 345.766,151.225 346.312,158.599 346.859,167.159 347.405,177.545 347.952,191.171 \n",
|
||||
" 348.498,212.373 349.045,290.845 349.591,221.842 350.138,203.778 350.684,194.709 351.231,189.243 351.777,185.758 352.324,183.547 352.87,182.235 353.417,181.602 \n",
|
||||
" 353.963,181.504 354.51,181.843 355.056,182.549 355.603,183.566 356.149,184.851 356.696,186.365 357.242,188.074 357.789,189.943 358.335,191.938 358.882,194.019 \n",
|
||||
" 359.428,196.146 359.975,198.271 360.521,200.344 361.068,202.31 361.614,204.112 362.161,205.696 362.707,207.013 363.254,208.026 363.8,208.714 364.347,209.072 \n",
|
||||
" 364.893,209.117 365.44,208.879 365.986,208.402 366.533,207.736 367.079,206.936 367.626,206.053 368.172,205.135 368.719,204.226 369.265,203.362 369.812,202.576 \n",
|
||||
" 370.358,201.893 370.905,201.339 371.451,200.931 371.998,200.69 372.544,200.633 373.091,200.776 373.637,201.138 374.184,201.741 374.73,202.609 375.277,203.771 \n",
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" 88.9064,51.9813 89.4442,52.5818 89.982,53.1824 90.5198,53.783 91.0576,54.3835 91.5955,54.9841 92.1333,55.5846 92.6711,56.1852 93.2089,56.7857 93.7467,57.3863 \n",
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" 94.2845,57.9868 94.8223,58.5874 95.3601,59.1879 95.898,59.7885 96.4358,60.389 96.9736,60.9896 97.5114,61.5901 98.0492,62.1907 98.587,62.7913 99.1248,63.3918 \n",
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" 99.6626,63.9924 100.2,64.5929 100.738,65.1935 101.276,65.794 101.814,66.3946 102.352,66.9951 102.89,67.5957 103.427,68.1962 103.965,68.7968 104.503,69.3973 \n",
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" 105.041,69.9979 105.579,70.5985 106.116,71.199 106.654,71.7996 107.192,72.4001 107.73,73.0007 108.268,73.6012 108.805,74.2018 109.343,74.8023 109.881,75.4029 \n",
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" 115.797,82.009 116.335,82.6095 116.873,83.2101 117.41,83.8106 117.948,84.4112 118.486,85.0117 119.024,85.6123 119.562,86.2128 120.099,86.8134 120.637,87.4139 \n",
|
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" 121.175,88.0145 121.713,88.6151 122.251,89.2156 122.789,89.8162 123.326,90.4167 123.864,91.0173 124.402,91.6178 124.94,92.2184 125.478,92.8189 126.015,93.4195 \n",
|
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" 126.553,94.02 127.091,94.6206 127.629,95.2211 128.167,95.8217 128.704,96.4223 129.242,97.0228 129.78,97.6234 130.318,98.2239 130.856,98.8245 131.394,99.425 \n",
|
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" 131.931,100.026 132.469,100.626 133.007,101.227 133.545,101.827 134.083,102.428 134.62,103.028 135.158,103.629 135.696,104.229 136.234,104.83 136.772,105.431 \n",
|
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" 137.309,106.031 137.847,106.632 138.385,107.232 138.923,107.833 139.461,108.433 139.999,109.034 140.536,109.634 141.074,110.235 141.612,110.836 142.15,111.436 \n",
|
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" 142.688,112.037 143.225,112.637 143.763,113.238 144.301,113.838 144.839,114.439 145.377,115.039 145.914,115.64 146.452,116.241 146.99,116.841 147.528,117.442 \n",
|
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" 148.066,118.042 148.604,118.643 149.141,119.243 149.679,119.844 150.217,120.444 150.755,121.045 151.293,121.645 151.83,122.246 152.368,122.847 152.906,123.447 \n",
|
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" 153.444,124.048 153.982,124.648 154.519,125.249 155.057,125.849 155.595,126.45 156.133,127.05 156.671,127.651 157.209,128.252 157.746,128.852 158.284,129.453 \n",
|
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" 158.822,130.053 159.36,130.654 159.898,131.254 160.435,131.855 160.973,132.455 161.511,133.056 162.049,133.657 162.587,134.257 163.124,134.858 163.662,135.458 \n",
|
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" 164.2,136.059 164.738,136.659 165.276,137.26 165.813,137.86 166.351,138.461 166.889,139.062 167.427,139.662 167.965,140.263 168.503,140.863 169.04,141.464 \n",
|
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" 169.578,142.064 170.116,142.665 170.654,143.265 171.192,143.866 171.729,144.467 172.267,145.067 172.805,145.668 173.343,146.268 173.881,146.869 174.418,147.469 \n",
|
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" 174.956,148.07 175.494,148.67 176.032,149.271 176.57,149.872 177.108,150.472 177.645,151.073 178.183,151.673 178.721,152.274 179.259,152.874 179.797,153.475 \n",
|
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" 180.334,154.075 180.872,154.676 181.41,155.276 181.948,155.877 182.486,156.478 183.023,157.078 183.561,157.679 184.099,158.279 184.637,158.88 185.175,159.48 \n",
|
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" 185.713,160.081 186.25,160.681 186.788,161.282 187.326,161.883 187.864,162.483 188.402,163.084 188.939,163.684 189.477,164.285 190.015,164.885 190.553,165.486 \n",
|
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" 191.091,166.086 191.628,166.687 192.166,167.288 192.704,167.888 193.242,168.489 193.78,169.089 194.318,169.69 194.855,170.29 195.393,170.891 195.931,171.491 \n",
|
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" 196.469,172.092 197.007,172.693 197.544,173.293 198.082,173.894 198.62,174.494 199.158,175.095 199.696,175.695 200.233,176.296 200.771,176.896 201.309,177.497 \n",
|
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" 201.847,178.098 202.385,178.698 202.923,179.299 203.46,179.899 203.998,180.5 204.536,181.1 205.074,181.701 205.612,182.301 206.149,182.902 206.687,183.503 \n",
|
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" 207.225,184.103 207.763,184.704 208.301,185.304 208.838,185.905 209.376,186.505 209.914,187.106 210.452,187.706 210.99,188.307 211.528,188.907 212.065,189.508 \n",
|
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" 212.603,190.109 213.141,190.709 213.679,191.31 214.217,191.91 214.754,192.511 215.292,193.111 215.83,193.712 216.368,194.312 216.906,194.913 217.443,195.514 \n",
|
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" 217.981,196.114 218.519,196.715 219.057,197.315 219.595,197.916 220.132,198.516 220.67,199.117 221.208,199.717 221.746,200.318 222.284,200.919 222.822,201.519 \n",
|
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" 223.359,202.12 223.897,202.72 224.435,203.321 224.973,203.921 225.511,204.522 226.048,205.122 226.586,205.723 227.124,206.324 227.662,206.924 228.2,207.525 \n",
|
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" 228.737,208.125 229.275,208.726 229.813,209.326 230.351,209.927 230.889,210.527 231.427,211.128 231.964,211.729 232.502,212.329 233.04,212.93 233.578,213.53 \n",
|
||||
" 234.116,214.131 234.653,214.731 235.191,215.332 235.729,215.932 236.267,216.533 236.805,217.134 237.342,217.734 237.88,218.335 238.418,218.935 238.956,219.536 \n",
|
||||
" 239.494,220.136 240.032,220.737 240.569,221.337 241.107,221.938 241.645,222.538 242.183,223.139 242.721,223.74 243.258,224.34 243.796,224.941 244.334,225.541 \n",
|
||||
" 244.872,226.142 245.41,226.742 245.947,227.343 246.485,227.943 247.023,228.544 247.561,229.145 248.099,229.745 248.637,230.346 249.174,230.946 249.712,231.547 \n",
|
||||
" 250.25,232.147 250.788,232.748 251.326,233.348 251.863,233.949 252.401,234.55 252.939,235.15 253.477,235.751 254.015,236.351 254.552,236.952 255.09,237.552 \n",
|
||||
" 255.628,238.153 256.166,238.753 256.704,239.354 257.242,239.955 257.779,240.555 258.317,241.156 258.855,241.756 259.393,242.357 259.931,242.957 260.468,243.558 \n",
|
||||
" 261.006,244.158 261.544,244.759 262.082,245.36 262.62,245.96 263.157,246.561 263.695,247.161 264.233,247.762 264.771,248.362 265.309,248.963 265.847,249.563 \n",
|
||||
" 266.384,250.164 266.922,250.765 267.46,251.365 267.998,251.966 268.536,252.566 269.073,253.167 269.611,253.767 270.149,254.368 270.687,254.968 271.225,255.569 \n",
|
||||
" 271.762,256.169 272.3,256.77 272.838,257.371 273.376,257.971 273.914,258.572 274.451,259.172 274.989,259.773 275.527,260.373 276.065,260.974 276.603,261.574 \n",
|
||||
" 277.141,262.175 277.678,262.776 278.216,263.376 278.754,263.977 279.292,264.577 279.83,265.178 280.367,265.778 280.905,266.379 281.443,266.979 281.981,267.58 \n",
|
||||
" 282.519,268.181 283.056,268.781 283.594,269.382 284.132,269.982 284.67,270.583 285.208,271.183 285.746,271.784 286.283,272.384 286.821,272.985 287.359,273.586 \n",
|
||||
" 287.897,274.186 288.435,274.787 288.972,275.387 289.51,275.988 290.048,276.588 290.586,277.189 291.124,277.789 291.661,278.39 292.199,278.991 292.737,279.591 \n",
|
||||
" 293.275,280.192 293.813,280.792 294.351,281.393 294.888,281.993 295.426,282.594 295.964,283.194 296.502,283.795 297.04,284.395 297.577,284.996 298.115,285.597 \n",
|
||||
" 298.653,286.197 299.191,286.798 299.729,287.398 300.266,287.999 300.804,288.599 301.342,289.2 301.88,289.8 302.418,290.401 302.956,291.002 303.493,291.602 \n",
|
||||
" 304.031,292.203 304.569,292.803 305.107,293.404 305.645,294.004 306.182,294.605 306.72,295.205 307.258,295.806 307.796,296.407 308.334,297.007 308.871,297.608 \n",
|
||||
" 309.409,298.208 309.947,298.809 310.485,299.409 311.023,300.01 311.561,300.61 312.098,301.211 312.636,301.812 313.174,302.412 313.712,303.013 314.25,303.613 \n",
|
||||
" 314.787,304.214 315.325,304.814 315.863,305.415 316.401,306.015 316.939,306.616 317.476,307.217 318.014,307.817 318.552,308.418 319.09,309.018 319.628,309.619 \n",
|
||||
" 320.166,310.219 320.703,310.82 321.241,311.42 321.779,312.021 322.317,312.622 322.855,313.222 323.392,313.823 323.93,314.423 324.468,315.024 325.006,315.624 \n",
|
||||
" 325.544,316.225 326.081,316.825 326.619,317.426 327.157,318.027 327.695,318.627 328.233,319.228 328.77,319.828 329.308,320.429 329.846,321.029 330.384,321.63 \n",
|
||||
" 330.922,322.23 331.46,322.831 331.997,323.431 332.535,324.032 333.073,324.633 333.611,325.233 334.149,325.834 334.686,326.434 335.224,327.035 335.762,327.635 \n",
|
||||
" 336.3,328.236 336.838,328.836 337.375,329.437 337.913,330.038 338.451,330.638 338.989,331.239 339.527,331.839 340.065,332.44 340.602,333.04 341.14,333.641 \n",
|
||||
" 341.678,334.241 342.216,334.842 342.754,335.443 343.291,336.043 343.829,336.644 344.367,337.244 344.905,337.845 345.443,338.445 345.98,339.046 346.518,339.646 \n",
|
||||
" 347.056,340.247 347.594,340.848 348.132,341.448 348.67,342.049 349.207,342.649 349.745,343.25 350.283,343.85 350.821,344.451 351.359,345.051 351.896,345.652 \n",
|
||||
" 352.434,346.253 352.972,346.853 353.51,327.635 354.048,328.236 354.585,328.836 355.123,329.437 355.661,330.038 356.199,330.638 356.737,331.239 357.275,331.839 \n",
|
||||
" 357.812,332.44 358.35,333.04 358.888,333.641 359.426,334.241 359.964,334.842 360.501,335.443 361.039,336.043 361.577,336.644 362.115,337.244 362.653,337.845 \n",
|
||||
" 363.19,338.445 363.728,339.046 364.266,339.646 364.804,340.247 365.342,340.848 365.88,341.448 366.417,342.049 366.955,342.649 367.493,343.25 368.031,343.85 \n",
|
||||
" 368.569,344.451 369.106,345.051 369.644,345.652 370.182,346.253 370.72,346.853 371.258,347.454 371.795,348.054 372.333,348.655 372.871,349.255 373.409,349.856 \n",
|
||||
" 373.947,350.456 374.485,351.057 375.022,351.657 375.56,352.258 376.098,352.859 376.636,353.459 377.174,354.06 377.711,354.66 378.249,355.261 378.787,355.861 \n",
|
||||
" 379.325,356.462 379.863,357.062 380.4,357.663 380.938,358.264 381.476,358.864 382.014,359.465 382.552,360.065 383.089,360.666 383.627,361.266 384.165,361.867 \n",
|
||||
" 384.703,342.649 385.241,343.25 385.779,343.85 386.316,344.451 386.854,345.051 387.392,345.652 387.93,346.253 388.468,346.853 389.005,347.454 389.543,348.054 \n",
|
||||
" 390.081,348.655 390.619,349.255 391.157,349.856 391.694,350.456 392.232,351.057 392.77,351.657 393.308,352.258 393.846,352.859 394.384,353.459 394.921,354.06 \n",
|
||||
" 395.459,354.66 395.997,355.261 396.535,355.861 397.073,356.462 397.61,357.062 398.148,357.663 398.686,358.264 399.224,358.864 399.762,359.465 400.299,360.065 \n",
|
||||
" 400.837,360.666 401.375,361.266 401.913,361.867 402.451,362.467 402.989,363.068 403.526,363.669 404.064,344.451 404.602,345.051 405.14,345.652 405.678,346.253 \n",
|
||||
" 406.215,346.853 406.753,347.454 407.291,348.054 407.829,348.655 408.367,349.255 408.904,349.856 409.442,350.456 409.98,351.057 410.518,351.657 411.056,352.258 \n",
|
||||
" 411.594,352.859 412.131,353.459 412.669,354.06 413.207,354.66 413.745,355.261 414.283,355.861 414.82,356.462 415.358,357.062 415.896,357.663 416.434,358.264 \n",
|
||||
" 416.972,358.864 417.509,359.465 418.047,360.065 418.585,360.666 419.123,361.266 419.661,361.867 420.199,362.467 420.736,363.068 421.274,363.669 421.812,364.269 \n",
|
||||
" 422.35,345.051 422.888,345.652 423.425,346.253 423.963,346.853 424.501,347.454 425.039,348.054 425.577,348.655 426.114,349.255 426.652,349.856 427.19,350.456 \n",
|
||||
" 427.728,351.057 428.266,351.657 428.804,352.258 429.341,352.859 429.879,353.459 430.417,354.06 430.955,354.66 431.493,355.261 432.03,355.861 432.568,356.462 \n",
|
||||
" 433.106,357.062 433.644,357.663 434.182,358.264 434.719,358.864 435.257,359.465 435.795,360.065 436.333,360.666 436.871,361.266 437.408,361.867 437.946,362.467 \n",
|
||||
" 438.484,363.068 439.022,363.669 439.56,364.269 440.098,364.87 440.635,345.652 441.173,346.253 441.711,346.853 442.249,347.454 442.787,348.054 443.324,348.655 \n",
|
||||
" 443.862,349.255 444.4,349.856 444.938,350.456 445.476,351.057 446.013,351.657 446.551,352.258 447.089,352.859 447.627,353.459 448.165,354.06 448.703,354.66 \n",
|
||||
" 449.24,355.261 449.778,355.861 450.316,356.462 450.854,357.062 451.392,357.663 451.929,358.264 452.467,358.864 453.005,359.465 453.543,360.065 454.081,360.666 \n",
|
||||
" 454.618,361.266 455.156,361.867 455.694,362.467 456.232,363.068 456.77,363.669 457.308,364.269 457.845,364.87 458.383,365.47 458.921,346.253 459.459,346.853 \n",
|
||||
" 459.997,347.454 460.534,348.054 461.072,348.655 461.61,349.255 462.148,349.856 462.686,350.456 463.223,351.057 463.761,351.657 464.299,352.258 464.837,352.859 \n",
|
||||
" 465.375,353.459 465.913,354.06 466.45,354.66 466.988,355.261 467.526,355.861 468.064,356.462 468.602,357.062 469.139,357.663 469.677,358.264 470.215,358.864 \n",
|
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" 470.753,359.465 471.291,360.065 471.828,360.666 472.366,361.266 472.904,361.867 473.442,362.467 473.98,363.068 474.518,363.669 475.055,364.269 475.593,364.87 \n",
|
||||
" 476.131,365.47 476.669,366.071 477.207,346.853 477.744,347.454 478.282,348.054 478.82,348.655 479.358,349.255 479.896,349.856 480.433,350.456 480.971,351.057 \n",
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" 481.509,351.657 482.047,352.258 482.585,352.859 483.123,353.459 483.66,354.06 484.198,354.66 484.736,355.261 485.274,355.861 485.812,356.462 486.349,357.062 \n",
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||||
" 486.887,357.663 487.425,358.264 487.963,358.864 488.501,359.465 489.038,360.065 489.576,360.666 490.114,361.266 490.652,361.867 491.19,362.467 491.727,363.068 \n",
|
||||
" 492.265,363.669 492.803,364.269 493.341,364.87 493.879,365.47 494.417,366.071 494.954,366.671 495.492,347.454 496.03,348.054 496.568,348.655 497.106,349.255 \n",
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||||
" 497.643,349.856 498.181,350.456 498.719,351.057 499.257,351.657 499.795,352.258 500.332,352.859 500.87,353.459 501.408,354.06 501.946,354.66 502.484,355.261 \n",
|
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" 503.022,355.861 503.559,356.462 504.097,357.062 504.635,357.663 505.173,358.264 505.711,358.864 506.248,359.465 506.786,360.065 507.324,360.666 507.862,361.266 \n",
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" 508.4,361.867 508.937,362.467 509.475,363.068 510.013,363.669 510.551,364.269 511.089,364.87 511.627,365.47 512.164,366.071 512.702,366.671 513.24,367.272 \n",
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" 513.778,348.054 514.316,348.655 514.853,349.255 515.391,349.856 515.929,350.456 516.467,351.057 517.005,351.657 517.542,352.258 518.08,352.859 518.618,353.459 \n",
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" 519.156,354.06 519.694,354.66 520.232,355.261 520.769,355.861 521.307,356.462 521.845,357.062 522.383,357.663 522.921,358.264 523.458,358.864 523.996,359.465 \n",
|
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" 524.534,360.065 525.072,360.666 525.61,361.266 526.147,361.867 526.685,362.467 527.223,363.068 527.761,363.669 528.299,364.269 528.837,364.87 529.374,365.47 \n",
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" 535.29,352.258 535.828,352.859 536.366,353.459 536.904,354.06 537.441,354.66 537.979,355.261 538.517,355.861 539.055,356.462 539.593,357.062 540.131,357.663 \n",
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" 540.668,358.264 541.206,358.864 541.744,359.465 542.282,360.065 542.82,360.666 543.357,361.266 543.895,361.867 544.433,362.467 544.971,363.068 545.509,363.669 \n",
|
||||
" 546.046,364.269 546.584,364.87 547.122,365.47 547.66,366.071 548.198,366.671 548.736,367.272 549.273,367.872 549.811,368.473 550.349,349.255 550.887,349.856 \n",
|
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" 551.425,350.456 551.962,351.057 552.5,351.657 553.038,352.258 553.576,352.859 554.114,353.459 554.651,354.06 555.189,354.66 555.727,355.261 556.265,355.861 \n",
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" 556.803,356.462 557.341,357.062 557.878,357.663 558.416,358.264 558.954,358.864 559.492,359.465 560.03,360.065 560.567,360.666 561.105,361.266 561.643,361.867 \n",
|
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" 562.181,362.467 562.719,363.068 563.256,363.669 563.794,364.269 564.332,364.87 564.87,365.47 565.408,366.071 565.946,366.671 566.483,367.272 567.021,367.872 \n",
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" 567.559,368.473 568.097,369.074 568.635,349.856 569.172,350.456 569.71,351.057 570.248,351.657 570.786,352.258 571.324,352.859 571.861,353.459 572.399,354.06 \n",
|
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" 572.937,354.66 573.475,355.261 574.013,355.861 574.551,356.462 575.088,357.062 575.626,357.663 576.164,358.264 576.702,358.864 577.24,359.465 577.777,360.065 \n",
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" 578.315,360.666 578.853,361.266 579.391,361.867 579.929,362.467 580.466,363.068 581.004,363.669 581.542,364.269 582.08,364.87 582.618,365.47 583.156,366.071 \n",
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" 583.693,366.671 584.231,367.272 584.769,367.872 585.307,368.473 585.845,369.074 586.382,369.674 586.92,350.456 587.458,351.057 587.996,351.657 588.534,352.258 \n",
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" 589.071,352.859 589.609,353.459 590.147,354.06 590.685,354.66 591.223,355.261 591.76,355.861 592.298,356.462 592.836,357.062 593.374,357.663 593.912,358.264 \n",
|
||||
" 594.45,358.864 594.987,359.465 595.525,360.065 596.063,360.666 \n",
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" \"/>\n",
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"<polygon clip-path=\"url(#clip00)\" points=\"\n",
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"505.547,55.057 578.063,55.057 578.063,24.817 505.547,24.817 \n",
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" \" fill=\"#ffffff\" fill-opacity=\"1\"/>\n",
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"<polyline clip-path=\"url(#clip00)\" style=\"stroke:#00002d; stroke-width:0.8; stroke-opacity:1; fill:none\" points=\"\n",
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" 505.547,55.057 578.063,55.057 578.063,24.817 505.547,24.817 505.547,55.057 \n",
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" \"/>\n",
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"<polyline clip-path=\"url(#clip00)\" style=\"stroke:#0099ff; stroke-width:0.8; stroke-opacity:1; fill:none\" points=\"\n",
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" 511.547,39.937 547.547,39.937 \n",
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" \"/>\n",
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"<g clip-path=\"url(#clip00)\">\n",
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"<text style=\"fill:#00002d; fill-opacity:1; font-family:Arial,Helvetica Neue,Helvetica,sans-serif; font-size:12; text-anchor:start;\" transform=\"rotate(0, 553.547, 44.437)\" x=\"553.547\" y=\"44.437\">y1</text>\n",
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"</g>\n",
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"</svg>\n"
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]
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},
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"execution_count": 5,
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"metadata": {},
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"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"h_phase = unwrap(-atan2(imag(h),real(h)))\n",
|
||||
"plot(ws, h_phase, xlabel = \"Frequency (Hz)\", ylabel = \"Phase (radians)\")"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"outputs": [],
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"source": []
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}
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],
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||||
"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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"display_name": "Julia 0.5.0",
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"language": "julia",
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"name": "julia-0.5"
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},
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||||
"language_info": {
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"file_extension": ".jl",
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"mimetype": "application/julia",
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"name": "julia",
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||||
"version": "0.5.0"
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}
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},
|
||||
"nbformat": 4,
|
||||
"nbformat_minor": 2
|
||||
}
|
||||
File diff suppressed because one or more lines are too long
File diff suppressed because one or more lines are too long
|
|
@ -0,0 +1,97 @@
|
|||
#' % FIR filter design with Julia
|
||||
#' % Matti Pastell
|
||||
#' % 21th April 2016
|
||||
#'
|
||||
#' # Introduction
|
||||
#'
|
||||
#' This an example of a julia script that can be published using
|
||||
#' [Weave](http://mpastell.github.io/Weave.jl/latest/usage/).
|
||||
#' The script can be executed normally using Julia
|
||||
#' or published to HTML or pdf with Weave.
|
||||
#' Text is written in markdown in lines starting with "`#'` " and code
|
||||
#' is executed and results are included in the published document.
|
||||
#'
|
||||
#' Notice that you don't need to define chunk options, but you can using
|
||||
#' `#+`. just before code e.g. `#+ term=True, caption='Fancy plots.'`.
|
||||
#' If you're viewing the published version have a look at the
|
||||
#' [source](FIR_design_plots.jl) to see the markup.
|
||||
#'
|
||||
#'
|
||||
#' # FIR Filter Design
|
||||
#'
|
||||
#' We'll implement lowpass, highpass and ' bandpass FIR filters. If
|
||||
#' you want to read more about DSP I highly recommend [The Scientist
|
||||
#' and Engineer's Guide to Digital Signal
|
||||
#' Processing](http://www.dspguide.com/) which is freely available
|
||||
#' online.
|
||||
#'
|
||||
#' ## Calculating frequency response
|
||||
#'
|
||||
#' DSP.jl package doesn't (yet) have a method to calculate the
|
||||
#' the frequency response of a FIR filter so we define it:
|
||||
#'
|
||||
#'
|
||||
#+
|
||||
|
||||
using Plots, DSP
|
||||
plotly()
|
||||
|
||||
function FIRfreqz(b::Array, w = linspace(0, π, 1024))
|
||||
n = length(w)
|
||||
h = Array{Complex64}(n)
|
||||
sw = 0
|
||||
for i = 1:n
|
||||
for j = 1:length(b)
|
||||
sw += b[j]*exp(-im*w[i])^-j
|
||||
end
|
||||
h[i] = sw
|
||||
sw = 0
|
||||
end
|
||||
return h
|
||||
end
|
||||
|
||||
#'
|
||||
#' ## Design Lowpass FIR filter
|
||||
#'
|
||||
#' Designing a lowpass FIR filter is very simple to do with DSP.jl, all you
|
||||
#' need to do is to define the window length, cut off frequency and the
|
||||
#' window. We will define a lowpass filter with cut off frequency at 5Hz for a signal
|
||||
#' sampled at 20 Hz.
|
||||
#' We will use the Hamming window, which is defined as:
|
||||
#' $w(n) = \alpha - \beta\cos\frac{2\pi n}{N-1}$, where $\alpha=0.54$ and $\beta=0.46$
|
||||
#'
|
||||
#'
|
||||
#'
|
||||
#+
|
||||
|
||||
fs = 20
|
||||
f = digitalfilter(Lowpass(5, fs = fs), FIRWindow(hamming(61)))
|
||||
w = linspace(0, pi, 1024)
|
||||
h = FIRfreqz(f, w)
|
||||
|
||||
#'
|
||||
#' ## Plot the frequency and impulse response
|
||||
#'
|
||||
#' The next code chunk is executed in term mode, see the [script](FIR_design.jl) for syntax.
|
||||
#'
|
||||
#+ term=true
|
||||
|
||||
h_db = log10(abs(h));
|
||||
ws = w/pi*(fs/2)
|
||||
|
||||
|
||||
#+
|
||||
|
||||
plot(ws, h_db,
|
||||
xlabel = "Frequency (Hz)", ylabel = "Magnitude (db)")
|
||||
|
||||
#'
|
||||
#' And again with default options
|
||||
#'
|
||||
#'
|
||||
#+
|
||||
|
||||
h_phase = unwrap(-atan2(imag(h),real(h)))
|
||||
plot(ws, h_phase,
|
||||
xlabel = "Frequency (Hz)", ylabel = "Phase (radians)")
|
||||
|
||||
File diff suppressed because one or more lines are too long
Some files were not shown because too many files have changed in this diff Show More
Loading…
Reference in New Issue