Fixed output format and tests for PyPlot

REQUIRE

@@ -1,4 +1,4 @@
-julia 0.3
+julia 0.4
 Compat
 ArgParse
 Docile

src/pyplot.jl

@@ -1,13 +1,14 @@
 using PyPlot
 
-function savefigs_pyplot(chunk, report::Report)
+function savefigs_pyplot(report::Report)
+    chunk = report.cur_chunk
     fignames = AbstractString[]
     ext = report.formatdict[:fig_ext]
     figpath = joinpath(report.cwd, chunk.options[:fig_path])
     isdir(figpath) || mkdir(figpath)
     chunkid = (chunk.options[:name] == nothing) ? chunk.number : chunk.options[:name]
     #Iterate over all open figures, save them and store names
-    #info("Saving figs")
+    
 
     for fig = plt[:get_fignums]()
         full_name, rel_name = get_figname(report, chunk, fignum=fig)

src/run.jl

@@ -102,16 +102,17 @@ function run_code(chunk::CodeChunk, report::Report, SandBox::Module)
     for (str_expr, expr) = expressions
         reset_report(report)
         (obj, out) = capture_output(expr, SandBox, chunk.options[:term], rcParams[:plotlib])
-
-        if rcParams[:plotlib] == "pyplot"
-            savefigs_pyplot(chunk, report::Report)
-        end
-
         displayed = report.cur_result #Not needed?
         figures = report.figures #Captured figures
         result = ChunkOutput(str_expr, out, displayed, figures)
         push!(results, result)
     end
+
+    #Save figures only in the end of chunk for PyPlot
+    if rcParams[:plotlib] == "PyPlot"
+        savefigs_pyplot(report::Report)
+    end
+
     return results
 end
 
@@ -354,7 +355,7 @@ function collect_results(chunk::CodeChunk, fmt::ScriptResult)
     content = ""
     result_no = 1
     result_chunks = CodeChunk[ ]
-    for r =chunk.result
+    for r = chunk.result
         if strip(r.stdout) == "" && isempty(r.figures)  && r.displayed == ""
             content *= r.code
         else
@@ -369,7 +370,8 @@ function collect_results(chunk::CodeChunk, fmt::ScriptResult)
         end
     end
     if content != ""
-         rchunk = CodeChunk(content, chunk.number, chunk.start_line, chunk.option_AbstractString, copy(chunk.options))
+        startswith(content, "\n") || (content = "\n" * content)
+        rchunk = CodeChunk(content, chunk.number, chunk.start_line, chunk.option_AbstractString, copy(chunk.options))
         push!(result_chunks, rchunk)
     end
 

test/REQUIRE

@@ -1,5 +1,4 @@
-julia 0.3
+julia 0.4
 Cairo
 Gadfly
-Winston
+PyPlot
-PyPlot

test/documents/pyplot_formats_ref.md

@@ -24,19 +24,18 @@ plot(x, sin(x))
 
 ````julia
 julia> x = linspace(0, 2π, 200)
+
 linspace(0.0,6.283185307179586,200)
-
 julia> plot(x, sin(x))
+
 1-element Array{Any,1}:
- PyObject <matplotlib.lines.Line2D object at 0x7f702c979c10>
+ PyObject <matplotlib.lines.Line2D object at 0x7f11ccf03a10>
-
 julia> y = 20
-20
 
+20
 julia> plot(x, cos(x))
 1-element Array{Any,1}:
- PyObject <matplotlib.lines.Line2D object at 0x7f702c979e90>
+ PyObject <matplotlib.lines.Line2D object at 0x7f11ccf03410>
-
 ````
 
 

test/documents/pyplot_formats_ref.rst

@@ -34,21 +34,20 @@
 
 
 .. code-block:: julia
-    
-    julia> x = linspace(0, 2π, 200)
-    linspace(0.0,6.283185307179586,200)
-    
-    julia> plot(x, sin(x))
-    1-element Array{Any,1}:
-     PyObject <matplotlib.lines.Line2D object at 0x7f702b4e15d0>
-    
-    julia> y = 20
-    20
-    
-    julia> plot(x, cos(x))
-    1-element Array{Any,1}:
-     PyObject <matplotlib.lines.Line2D object at 0x7f702b4e1850>
 
+julia> x = linspace(0, 2π, 200)
+
+linspace(0.0,6.283185307179586,200)
+julia> plot(x, sin(x))
+
+1-element Array{Any,1}:
+ PyObject <matplotlib.lines.Line2D object at 0x7f995cdeae90>
+julia> y = 20
+
+20
+julia> plot(x, cos(x))
+1-element Array{Any,1}:
+ PyObject <matplotlib.lines.Line2D object at 0x7f995cdf9b90>
 
 
 

test/documents/pyplot_formats_ref.tex

@@ -3,16 +3,29 @@
 
 
 
-\begin{juliacode}using PyPlot
+\begin{juliacode}
+using PyPlot
 x = linspace(0, 2π, 200)
 plot(x, sin(x))
 \end{juliacode}
+\begin{figure}[ht]
+\center
+\includegraphics[width=\linewidth]{figures/pyplot_formats_sin_fun_1.pdf}
+\caption{sin(x) function.}
+\label{fig:sin_fun}
+\end{figure}
 
 
 
+\begin{figure}[htpb]
+\center
+\includegraphics[width=\linewidth]{figures/pyplot_formats_2_1.pdf}
+\caption{cos(x) function.}
+\end{figure}
 
 
 
+\includegraphics[width=\linewidth]{figures/pyplot_formats_cos2_fun_1.pdf}
 
 
 
@@ -23,17 +36,20 @@ linspace(0.0,6.283185307179586,200)
 julia> plot(x, sin(x))
 
 1-element Array{Any,1}:
- PyObject <matplotlib.lines.Line2D object at 0x7f2eac1dca90>
+ PyObject <matplotlib.lines.Line2D object at 0x7f84f5e74750>
 julia> y = 20
 
 20
 julia> plot(x, cos(x))
 1-element Array{Any,1}:
- PyObject <matplotlib.lines.Line2D object at 0x7f2eac1f3650>
+ PyObject <matplotlib.lines.Line2D object at 0x7f84f5e74950>
 \end{juliaterm}
+\includegraphics[width=\linewidth]{figures/pyplot_formats_4_1.pdf}
 
 
 
-\begin{juliacode}x = randn(100, 100)
+\begin{juliacode}
+x = randn(100, 100)
 contourf(x)
 \end{juliacode}
+\includegraphics[width=15cm]{figures/pyplot_formats_5_1.pdf}

test/pyplot_formats.jl

@@ -6,8 +6,8 @@ cleanup = true
 weave("documents/pyplot_formats.txt", plotlib="pyplot", doctype="tex")
 result = readall(open("documents/pyplot_formats.tex"))
 ref = readall(open("documents/pyplot_formats_ref.tex"))
-result = replace(result, r"\s*PyObject.*\n", "") #Remove PyObjects, because they change
+result = replace(result, r"\s*PyObject.*\n", "\n") #Remove PyObjects, because they change
-ref = replace(ref, r"\s*PyObject.*\n", "")
+ref = replace(ref, r"\s*PyObject.*\n", "\n")
 @test result == ref
 
 weave("documents/pyplot_formats.txt", plotlib="pyplot", doctype="github")
@@ -31,4 +31,3 @@ if cleanup
     rm("documents/pyplot_formats.md")
     rm("documents/figures", recursive = true)
 end
-

test/runtests.jl

@@ -9,18 +9,17 @@ using Base.Test
 info("Test: Chunk options")
 include("chunk_options.jl")
 
-# Cache is not implemented for new output format
+# Cache is currently not implemented for new output format
 #info("Test: Caching")
 #include("cache_test.jl")
 
+# Winston support not updated for 0.4
+# info("Test: Weaving with Winston")
+# include("winston_formats.jl")
 
-if VERSION.minor == 3
-  info("Test: Weaving with Winston")
-  include("winston_formats.jl")
-end
 
 info("Test: Weaving with Gadfly")
 include("gadfly_formats.jl")
 
-#info("Test: Weaving with PyPlot")
+info("Test: Weaving with PyPlot")
-#include("pyplot_formats.jl")
+include("pyplot_formats.jl")