First version with Plots.jl support, need to decide how to display figures

pull/37/head
Matti Pastell 2016-04-27 10:18:06 +03:00
parent 87e7965627
commit f24b2157a6
3 changed files with 131 additions and 1 deletions

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% Intro to Weave.jl with Plot.jl
% Matti Pastell
% 20th April 2016
# Introduction
This a sample [Julia](http://julialang.org/) noweb document that can
be executed using [Weave.jl](https://github.com/mpastell/Weave.jl).
The code is delimited from docs using markdown fenced code blocks
markup which can be seen looking at the source document [gadfly_md_sample.jmd](gadfly_md_sample.jmd)
in the examples directory of the package. The source document can be executed
and the results with Plot.jl plots are captured in the resulting file.
You can create markdown output or pdf and HTML directly (with Pandoc) using
the weave command as follows:
```{julia; eval=false}
using Weave
#Markdown
weave(Pkg.dir("Weave","examples","gadfly_md_sample.jmd"), informat="markdown",
out_path = :pwd, doctype = "pandoc")
#HTML
weave(Pkg.dir("Weave","examples","gadfly_md_sample.jmd"), informat="markdown",
out_path = :pwd, doctype = "md2html")
#pdf
weave(Pkg.dir("Weave","examples","gadfly_md_sample.jmd"), informat="markdown",
out_path = :pwd, doctype = "md2pdf")
```
*The documents will be written to the Julia working directory when you
use the `out_path = :pwd`.*
# Capturing code
The basic code chunk will be run with default options and the code and
output will be captured.
```julia
using Plots
pyplot()
x = linspace(0, 2*pi)
println(x)
plot(x = x, y = sin(x))
```
```julia; term=true
plot(x = x, y = sin(x))
```
You can also control the way the results are captured, plot size etc.
using chunk options. Here is an example of a chunk that behaves like a repl.
```{julia;term=true}
x = 1:10
d = Dict("Weave" => "testing")
y = [2, 4 ,8]
```
```julia
plot(rand(100) / 3,reg=true,fill=(0,:green))
scatter!(rand(100),markersize=6,c=:orange)
```
You can also for instance hide the code and show only the figure, add a
caption to the figure and make it wider as follows (you can only see the
syntax from the source document):
```{julia;echo=false; fig_cap="A random walk."; label="random"; fig_width=8; fig_height=4}
plot(y = cumsum(randn(1000, 1)))
```
# Whats next
Read the documentation:
- stable: <http://mpastell.github.io/Weave.jl/stable/>
- latest: <http://mpastell.github.io/Weave.jl/latest/>
See other examples in: <https://github.com/mpastell/Weave.jl/tree/master/examples>

43
src/plotsjl.jl Normal file
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using Plots
#Captures figures
function Base.display(report::Report, m::MIME"image/png", data)
chunk = report.cur_chunk
full_name, rel_name = get_figname(report, chunk)
docformat = formats[report.formatdict[:doctype]]
push!(report.figures, rel_name)
report.fignum += 1
w = chunk.options[:fig_width]
h = chunk.options[:fig_height]
format = chunk.options[:fig_ext]
dpi = chunk.options[:dpi]
info("Caught a plot")
info(typeof(data))
savefig(data, full_name)
#This is probably not the correct way to handle different formats, but it works.
# if format == ".png"
# try
# draw(PNG(full_name, w, h, dpi=dpi), p)
# catch
# draw(PNG(full_name, w, h), p) #Compose < 0.3.1, Gadfly < 0.3.1
# end
# elseif format == ".pdf"
# draw(PDF(full_name, w, h), p)
# elseif format == ".ps"
# draw(PS(full_name, w, h), p)
# elseif format == ".svg"
# draw(SVG(full_name, w, h), p)
# elseif format == ".js.svg"
# draw(SVGJS(full_name, w, h), p)
# elseif format == ".tex"
# draw(PGF(full_name, w, h, true ), p)
# else:
# warn("Can't save figure. Unsupported format")
# end
end

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@ -144,6 +144,8 @@ function capture_output(expr::Expr, SandBox::Module, term, plotlib)
obj != nothing && display(obj)
elseif plotlib == "Gadfly" && typeof(obj) == Gadfly.Plot
obj != nothing && display(obj)
elseif plotlib == "Plots" && issubtype(typeof(obj), Plots.Plot)
obj != nothing && display(obj)
end
finally
@ -248,7 +250,10 @@ function init_plotting(plotlib)
elseif l_plotlib == "gadfly"
eval(parse("""include(Pkg.dir("Weave","src","gadfly.jl"))"""))
rcParams[:plotlib] = "Gadfly"
end
elseif l_plotlib == "plots"
eval(parse("""include(Pkg.dir("Weave","src","plotsjl.jl"))"""))
rcParams[:plotlib] = "Plots"
end
end
return nothing
end