Merge pull request #481 from dlfivefifty/patch-2

Mention Quarto in Related Packages

Project.toml

@@ -1,6 +1,6 @@
 name = "Weave"
 uuid = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9"
-version = "0.10.10"
+version = "0.10.12"
 
 [deps]
 Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
@@ -18,11 +18,11 @@ Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
 
 [compat]
-Highlights = "0.3.1, 0.4"
+Highlights = "0.3.1, 0.4, 0.5"
 JSON = "0.21"
 Mustache = "0.4.1, 0.5, 1"
 Plots = "0.28, 0.29, 1.0"
-RelocatableFolders = "0.1"
+RelocatableFolders = "0.1,0.2,0.3,1"
 Requires = "1.0"
 YAML = "0.3, 0.4"
 julia = "1.2"

README.md

@@ -97,3 +97,8 @@ Thanks for the important additions, fixes and comments.
 
 - [DiffEqTutorials.jl](https://github.com/JuliaDiffEq/DiffEqTutorials.jl) uses Weave to output tutorials (`.jmd` documents) to html, pdf and Jupyter notebooks.
 - [TuringTutorials](https://github.com/TuringLang/TuringTutorials) uses Weave to convert notebooks to html.
+
+## Related packages
+
+- [Literate.jl](https://github.com/fredrikekre/Literate.jl) can be used to generate Markdown and Jupyter notebooks directly from Julia source files with markdown in comments.
+- [Quarto](https://quarto.org) can generate Jupyter notebooks, HTML, or PDF directly from a Markdown format containing Julia code blocks, and also works with R and Python.

doc/src/usage.md

@@ -130,7 +130,7 @@ e.g. to include a Plots figure in markdown you can use:
 ```
 or to produce any HTML output:
 ```
-! display("text/html", "Header from julia");
+! display("text/html", HTML("Header from julia"));
 ```
 
 ### Script Format

src/Weave.jl

@@ -1,6 +1,6 @@
 module Weave
 
-using Highlights, Mustache, Requires, Pkg, REPL, RelocatableFolders
+using Highlights, Mustache, Requires, Pkg, REPL, RelocatableFolders, Base64
 
 # directories
 const PKG_DIR = normpath(@__DIR__, "..")
@@ -243,12 +243,12 @@ function specific_options!(weave_options, doctype)
 end
 
 get_out_path(doc, out_path, ext::Nothing = nothing) = get_out_path(doc, out_path, doc.format.extension)
-function get_out_path(doc, out_path, ext) 
+function get_out_path(doc, out_path, ext)
     if (out_path === :doc) || (out_path === :pwd)
         abspath(get_cwd(doc, out_path), string(doc.basename, '.', ext))
     elseif isempty(splitext(out_path)[2]) # directory given
         abspath(get_cwd(doc, out_path), string(doc.basename, '.', ext))
-    else 
+    else
         # out_path is given, but if extension is explitly provided override this will override the extension
         abspath(string(splitext(out_path)[1], '.', ext))
     end

src/plots.jl

@@ -1,6 +1,6 @@
 module WeavePlots
 
-using Base64, ..Plots, ..Weave
+using ..Base64, ..Plots, ..Weave
 
 
 # Pre-execute hooks to set the plot size for the chunk

src/run.jl

@@ -90,6 +90,8 @@ function run_doc(
         @info "Weaved all chunks" progress=1 _id=PROGRESS_ID
         cd_back()
         popdisplay(report) # ensure display pops out even if internal error occurs
+        # Temporary fig_path is not automatically removed because it contains files so...
+        !isnothing(fig_path) && startswith(fig_path, "jl_") && rm(normpath(cwd, fig_path), force=true, recursive=true)
     end
 
     return doc

src/writer/pandoc.jl

@@ -61,7 +61,7 @@ function write_doc(docformat::Pandoc2PDF, doc, rendered, out_path)
         cmd = `pandoc -f markdown+raw_tex -s  --pdf-engine=xelatex --highlight-style=tango
          $filt $citeproc $(docformat.pandoc_options)
          --include-in-header=$(docformat.header_template)
-         -V fontsize=12pt -o $(out)`
+         -o $(out)`
         proc = open(cmd, "r+")
         println(proc.in, rendered)
         close(proc.in)

test/test_display.jl

@@ -10,7 +10,7 @@ DataFrame(a=rand(10))
 ```
 """; doctype = "md2html")
 @test isdefined(doc.chunks[1], :rich_output)
-@test count("<tr>", doc.chunks[1].rich_output) == 12 # additonal 2 for name and type row
+@test count("<tr", doc.chunks[1].rich_output) == 12 # additonal 2 for name and type row
 
 # limit
 n = 100000