mirror of https://github.com/mpastell/Weave.jl
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@ -1,6 +1,6 @@
|
||||||
name = "Weave"
|
name = "Weave"
|
||||||
uuid = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9"
|
uuid = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9"
|
||||||
version = "0.10.6"
|
version = "0.10.12"
|
||||||
|
|
||||||
[deps]
|
[deps]
|
||||||
Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
|
Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
|
||||||
|
@ -12,15 +12,17 @@ Mustache = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70"
|
||||||
Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
|
Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
|
||||||
Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
|
Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
|
||||||
REPL = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
|
REPL = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
|
||||||
|
RelocatableFolders = "05181044-ff0b-4ac5-8273-598c1e38db00"
|
||||||
Requires = "ae029012-a4dd-5104-9daa-d747884805df"
|
Requires = "ae029012-a4dd-5104-9daa-d747884805df"
|
||||||
Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
|
Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
|
||||||
YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
|
YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
|
||||||
|
|
||||||
[compat]
|
[compat]
|
||||||
Highlights = "0.3.1, 0.4"
|
Highlights = "0.3.1, 0.4, 0.5"
|
||||||
JSON = "0.21"
|
JSON = "0.21"
|
||||||
Mustache = "0.4.1, 0.5, 1"
|
Mustache = "0.4.1, 0.5, 1"
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||||||
Plots = "0.28, 0.29, 1.0"
|
Plots = "0.28, 0.29, 1.0"
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||||||
|
RelocatableFolders = "0.1,0.2,0.3,1"
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||||||
Requires = "1.0"
|
Requires = "1.0"
|
||||||
YAML = "0.3, 0.4"
|
YAML = "0.3, 0.4"
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||||||
julia = "1.2"
|
julia = "1.2"
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||||||
|
|
|
@ -97,3 +97,8 @@ Thanks for the important additions, fixes and comments.
|
||||||
|
|
||||||
- [DiffEqTutorials.jl](https://github.com/JuliaDiffEq/DiffEqTutorials.jl) uses Weave to output tutorials (`.jmd` documents) to html, pdf and Jupyter notebooks.
|
- [DiffEqTutorials.jl](https://github.com/JuliaDiffEq/DiffEqTutorials.jl) uses Weave to output tutorials (`.jmd` documents) to html, pdf and Jupyter notebooks.
|
||||||
- [TuringTutorials](https://github.com/TuringLang/TuringTutorials) uses Weave to convert notebooks to html.
|
- [TuringTutorials](https://github.com/TuringLang/TuringTutorials) uses Weave to convert notebooks to html.
|
||||||
|
|
||||||
|
## Related packages
|
||||||
|
|
||||||
|
- [Literate.jl](https://github.com/fredrikekre/Literate.jl) can be used to generate Markdown and Jupyter notebooks directly from Julia source files with markdown in comments.
|
||||||
|
- [Quarto](https://quarto.org) can generate Jupyter notebooks, HTML, or PDF directly from a Markdown format containing Julia code blocks, and also works with R and Python.
|
||||||
|
|
|
@ -130,7 +130,7 @@ e.g. to include a Plots figure in markdown you can use:
|
||||||
```
|
```
|
||||||
or to produce any HTML output:
|
or to produce any HTML output:
|
||||||
```
|
```
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||||||
! display("text/html", "Header from julia");
|
! display("text/html", HTML("Header from julia"));
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||||||
```
|
```
|
||||||
|
|
||||||
### Script Format
|
### Script Format
|
||||||
|
|
21
src/Weave.jl
21
src/Weave.jl
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@ -1,14 +1,13 @@
|
||||||
module Weave
|
module Weave
|
||||||
|
|
||||||
using Highlights, Mustache, Requires, Pkg, REPL
|
using Highlights, Mustache, Requires, Pkg, REPL, RelocatableFolders, Base64
|
||||||
|
|
||||||
|
|
||||||
# directories
|
# directories
|
||||||
const PKG_DIR = normpath(@__DIR__, "..")
|
const PKG_DIR = normpath(@__DIR__, "..")
|
||||||
const TEMPLATE_DIR = normpath(PKG_DIR, "templates")
|
const TEMPLATE_DIR = @path joinpath(PKG_DIR, "templates")
|
||||||
const STYLESHEET_DIR = normpath(PKG_DIR, "stylesheets")
|
const STYLESHEET_DIR = @path joinpath(PKG_DIR, "stylesheets")
|
||||||
# keeps paths of sample documents for easy try
|
# keeps paths of sample documents for easy try
|
||||||
const EXAMPLE_FOLDER = normpath(PKG_DIR, "examples")
|
const EXAMPLE_FOLDER = @path joinpath(PKG_DIR, "examples")
|
||||||
|
|
||||||
# constant names
|
# constant names
|
||||||
const WEAVE_OPTION_NAME = "weave_options"
|
const WEAVE_OPTION_NAME = "weave_options"
|
||||||
|
@ -244,8 +243,16 @@ function specific_options!(weave_options, doctype)
|
||||||
end
|
end
|
||||||
|
|
||||||
get_out_path(doc, out_path, ext::Nothing = nothing) = get_out_path(doc, out_path, doc.format.extension)
|
get_out_path(doc, out_path, ext::Nothing = nothing) = get_out_path(doc, out_path, doc.format.extension)
|
||||||
get_out_path(doc, out_path, ext) = abspath(get_cwd(doc, out_path), string(doc.basename , '.', ext))
|
function get_out_path(doc, out_path, ext)
|
||||||
|
if (out_path === :doc) || (out_path === :pwd)
|
||||||
|
abspath(get_cwd(doc, out_path), string(doc.basename, '.', ext))
|
||||||
|
elseif isempty(splitext(out_path)[2]) # directory given
|
||||||
|
abspath(get_cwd(doc, out_path), string(doc.basename, '.', ext))
|
||||||
|
else
|
||||||
|
# out_path is given, but if extension is explitly provided override this will override the extension
|
||||||
|
abspath(string(splitext(out_path)[1], '.', ext))
|
||||||
|
end
|
||||||
|
end
|
||||||
"""
|
"""
|
||||||
notebook(source::AbstractString; kwargs...)
|
notebook(source::AbstractString; kwargs...)
|
||||||
|
|
||||||
|
|
|
@ -5,9 +5,11 @@ using ..Weave: isnothing, take2string!
|
||||||
using Markdown
|
using Markdown
|
||||||
import Markdown: @trigger, @breaking, Code, MD, withstream, startswith, LaTeX
|
import Markdown: @trigger, @breaking, Code, MD, withstream, startswith, LaTeX
|
||||||
|
|
||||||
# Note that this definition causes a "Method overwritten" warning,
|
# HACK: that this definition is type-piracy. It is required since `Markdown`
|
||||||
# but defining this function in __init__() is not legal in julia v1.5
|
# does not have a built in system for contextual rendering by users. `io` here
|
||||||
function Markdown.latex(io::IO, tex::Markdown.LaTeX)
|
# should always be either `IOBuffer` or `IOContext` since it is reached via
|
||||||
|
# `sprint` in all user-facing code paths in `Markdown`.
|
||||||
|
function Markdown.latex(io::Union{IOBuffer,IOContext}, tex::Markdown.LaTeX)
|
||||||
math_envs = ["align", "equation", "eqnarray"]
|
math_envs = ["align", "equation", "eqnarray"]
|
||||||
use_dollars =
|
use_dollars =
|
||||||
!any([occursin("\\begin{$me", tex.formula) for me in math_envs])
|
!any([occursin("\\begin{$me", tex.formula) for me in math_envs])
|
||||||
|
|
|
@ -1,6 +1,6 @@
|
||||||
module WeavePlots
|
module WeavePlots
|
||||||
|
|
||||||
using Base64, ..Plots, ..Weave
|
using ..Base64, ..Plots, ..Weave
|
||||||
|
|
||||||
|
|
||||||
# Pre-execute hooks to set the plot size for the chunk
|
# Pre-execute hooks to set the plot size for the chunk
|
||||||
|
|
|
@ -5,7 +5,7 @@ function parse_markdown(document_body; is_pandoc = false)
|
||||||
r"^<<(?<options>.*?)>>=\s*$",
|
r"^<<(?<options>.*?)>>=\s*$",
|
||||||
r"^@\s*$"
|
r"^@\s*$"
|
||||||
else
|
else
|
||||||
r"^[`~]{3}(\{?)julia\s*([;,]?)\s*(?<options>.*?)(\}|\s*)$",
|
r"^[`~]{3}(\{?)julia\s*([;,\{]?)\s*(?<options>.*?)(\}|\s*)$",
|
||||||
r"^[`~]{3}\s*$"
|
r"^[`~]{3}\s*$"
|
||||||
end
|
end
|
||||||
return header, parse_markdown_body(document_body, code_start, code_end, offset)
|
return header, parse_markdown_body(document_body, code_start, code_end, offset)
|
||||||
|
|
|
@ -0,0 +1,24 @@
|
||||||
|
abstract type ExportFormat <: WeaveFormat end
|
||||||
|
|
||||||
|
function Base.getproperty(sf::T, s::Symbol) where {T<:ExportFormat}
|
||||||
|
hasfield(T, s) && return getfield(sf, s)
|
||||||
|
return getproperty(sf.primaryformat, s)
|
||||||
|
end
|
||||||
|
function Base.setproperty!(sf::T, s::Symbol, v) where {T<:ExportFormat}
|
||||||
|
if hasfield(T, s)
|
||||||
|
setfield!(sf, s, v)
|
||||||
|
else
|
||||||
|
setproperty!(sf.primaryformat, s, v)
|
||||||
|
end
|
||||||
|
end
|
||||||
|
function Base.hasproperty(sf::T, s::Symbol) where {T<:ExportFormat}
|
||||||
|
hasfield(T, s) || hasproperty(sf.primaryformat, s)
|
||||||
|
end
|
||||||
|
|
||||||
|
render_doc(df::ExportFormat, body, doc) = render_doc(df.primaryformat, body, doc)
|
||||||
|
|
||||||
|
render_chunk(df::ExportFormat, chunk) = render_chunk(df.primaryformat, chunk)
|
||||||
|
# Need to define these to avoid ambiguities
|
||||||
|
render_chunk(df::ExportFormat, chunk::DocChunk) = render_chunk(df.primaryformat, chunk)
|
||||||
|
render_chunk(df::ExportFormat, chunk::CodeChunk) = render_chunk(df.primaryformat, chunk)
|
||||||
|
render_output(df::ExportFormat, output) = render_output(df.primaryformat, output)
|
|
@ -124,23 +124,9 @@ end
|
||||||
# Pandoc
|
# Pandoc
|
||||||
# ------
|
# ------
|
||||||
|
|
||||||
Base.@kwdef mutable struct Pandoc2HTML <: HTMLFormat
|
Base.@kwdef mutable struct Pandoc2HTML <: ExportFormat
|
||||||
description = "HTML via intermediate Pandoc Markdown (requires Pandoc 2)"
|
description = "HTML via intermediate Pandoc Markdown (requires Pandoc 2)"
|
||||||
extension = "md"
|
primaryformat = Pandoc()
|
||||||
codestart = '\n'
|
|
||||||
codeend = '\n'
|
|
||||||
termstart = codestart
|
|
||||||
termend = codeend
|
|
||||||
outputstart = '\n'
|
|
||||||
outputend = '\n'
|
|
||||||
mimetypes = ["image/png", "image/svg+xml", "image/jpg", "text/html", "text/markdown", "text/plain"]
|
|
||||||
fig_ext = ".png"
|
|
||||||
out_width = nothing
|
|
||||||
out_height = nothing
|
|
||||||
fig_pos = nothing
|
|
||||||
fig_env = nothing
|
|
||||||
# specials
|
|
||||||
preserve_header = true
|
|
||||||
template_path = nothing
|
template_path = nothing
|
||||||
stylesheet_path = nothing
|
stylesheet_path = nothing
|
||||||
highlight_theme = nothing
|
highlight_theme = nothing
|
||||||
|
|
|
@ -54,28 +54,14 @@ Base.@kwdef mutable struct Pandoc <: PandocFormat
|
||||||
end
|
end
|
||||||
register_format!("pandoc", Pandoc())
|
register_format!("pandoc", Pandoc())
|
||||||
|
|
||||||
|
|
||||||
const DEFAULT_PANDOC_OPTIONS = String[]
|
const DEFAULT_PANDOC_OPTIONS = String[]
|
||||||
|
|
||||||
Base.@kwdef mutable struct Pandoc2PDF <: PandocFormat
|
Base.@kwdef mutable struct Pandoc2PDF <: ExportFormat
|
||||||
description = "PDF via intermediate Pandoc Markdown"
|
description = "PDF via intermediate Pandoc Markdown"
|
||||||
extension = "md"
|
primaryformat = Pandoc()
|
||||||
codestart = "~~~~{.julia}"
|
|
||||||
codeend = "~~~~~~~~~~~~~\n"
|
|
||||||
termstart = codestart
|
|
||||||
termend = codeend
|
|
||||||
outputstart = "~~~~"
|
|
||||||
outputend = "~~~~\n\n"
|
|
||||||
# Prefer png figures for markdown conversion, svg doesn't work with latex
|
|
||||||
mimetypes = ["image/png", "image/jpg", "image/svg+xml", "text/markdown", "text/plain"]
|
|
||||||
fig_ext = ".png"
|
|
||||||
out_width = nothing
|
|
||||||
out_height = nothing
|
|
||||||
fig_pos = nothing
|
|
||||||
fig_env = nothing
|
|
||||||
# specials
|
|
||||||
preserve_header = true
|
|
||||||
header_template = normpath(TEMPLATE_DIR, "pandoc2pdf_header.txt")
|
|
||||||
pandoc_options = DEFAULT_PANDOC_OPTIONS
|
pandoc_options = DEFAULT_PANDOC_OPTIONS
|
||||||
|
header_template = normpath(TEMPLATE_DIR, "pandoc2pdf_header.txt")
|
||||||
end
|
end
|
||||||
register_format!("pandoc2pdf", Pandoc2PDF())
|
register_format!("pandoc2pdf", Pandoc2PDF())
|
||||||
|
|
||||||
|
|
|
@ -23,9 +23,9 @@ function render_doc(doc::WeaveDoc)
|
||||||
return render_doc(docformat, body, doc)
|
return render_doc(docformat, body, doc)
|
||||||
end
|
end
|
||||||
|
|
||||||
|
include("exportformat.jl")
|
||||||
include("common.jl")
|
include("common.jl")
|
||||||
|
include("pandocformats.jl")
|
||||||
include("htmlformats.jl")
|
include("htmlformats.jl")
|
||||||
include("texformats.jl")
|
include("texformats.jl")
|
||||||
include("pandocformats.jl")
|
|
||||||
include("miscformats.jl")
|
include("miscformats.jl")
|
||||||
|
|
|
@ -34,7 +34,10 @@ render_output(docformat::LaTeXFormat, output) = unicode2latex(docformat, output,
|
||||||
|
|
||||||
render_code(docformat::LaTeXFormat, code) = unicode2latex(docformat, code, true)
|
render_code(docformat::LaTeXFormat, code) = unicode2latex(docformat, code, true)
|
||||||
|
|
||||||
render_termchunk(docformat::LaTeXFormat, chunk) = string(docformat.termstart, chunk.output, docformat.termend, "\n")
|
render_termchunk(docformat::LaTeXFormat, chunk) =
|
||||||
|
string(docformat.termstart,
|
||||||
|
unicode2latex(docformat, chunk.output, true),
|
||||||
|
docformat.termend, "\n")
|
||||||
|
|
||||||
# from julia symbols (e.g. "\bfhoge") to valid latex
|
# from julia symbols (e.g. "\bfhoge") to valid latex
|
||||||
const UNICODE2LATEX = let
|
const UNICODE2LATEX = let
|
||||||
|
@ -149,11 +152,11 @@ end
|
||||||
Base.@kwdef mutable struct LaTeXMinted <: LaTeXFormat
|
Base.@kwdef mutable struct LaTeXMinted <: LaTeXFormat
|
||||||
description = "LaTeX using minted package for code highlighting"
|
description = "LaTeX using minted package for code highlighting"
|
||||||
extension = "tex"
|
extension = "tex"
|
||||||
codestart = "\\begin{minted}[escapeinside=||, mathescape, fontsize=\\small, xleftmargin=0.5em]{julia}"
|
codestart = "\\begin{minted}[texcomments = true, mathescape, fontsize=\\small, xleftmargin=0.5em]{julia}"
|
||||||
codeend = "\\end{minted}"
|
codeend = "\\end{minted}"
|
||||||
termstart = "\\begin{minted}[escapeinside=||, mathescape, fontsize=\\footnotesize, xleftmargin=0.5em]{jlcon}"
|
termstart = "\\begin{minted}[texcomments = true, mathescape, fontsize=\\footnotesize, xleftmargin=0.5em]{jlcon}"
|
||||||
termend = "\\end{minted}"
|
termend = "\\end{minted}"
|
||||||
outputstart = "\\begin{minted}[escapeinside=||, mathescape, fontsize=\\small, xleftmargin=0.5em, frame = leftline]{text}"
|
outputstart = "\\begin{minted}[texcomments = true, mathescape, fontsize=\\small, xleftmargin=0.5em, frame = leftline]{text}"
|
||||||
outputend = "\\end{minted}"
|
outputend = "\\end{minted}"
|
||||||
mimetypes = ["application/pdf", "image/png", "text/latex", "text/plain"]
|
mimetypes = ["application/pdf", "image/png", "text/latex", "text/plain"]
|
||||||
fig_ext = ".pdf"
|
fig_ext = ".pdf"
|
||||||
|
@ -198,8 +201,14 @@ function render_code(docformat::WeaveLaTeXFormat, code)
|
||||||
unicode2latex(docformat, ret, false)
|
unicode2latex(docformat, ret, false)
|
||||||
end
|
end
|
||||||
|
|
||||||
render_termchunk(docformat::WeaveLaTeXFormat, chunk) =
|
function render_termchunk(docformat::WeaveLaTeXFormat, chunk)
|
||||||
should_render(chunk) ? highlight_term(MIME("text/latex"), chunk.output, docformat.highlight_theme) : ""
|
if should_render(chunk)
|
||||||
|
ret = highlight_term(MIME("text/latex"), chunk.output, docformat.highlight_theme)
|
||||||
|
unicode2latex(docformat, ret, true)
|
||||||
|
else
|
||||||
|
""
|
||||||
|
end
|
||||||
|
end
|
||||||
|
|
||||||
function render_doc(docformat::WeaveLaTeXFormat, body, doc)
|
function render_doc(docformat::WeaveLaTeXFormat, body, doc)
|
||||||
return Mustache.render(
|
return Mustache.render(
|
||||||
|
@ -233,44 +242,23 @@ Base.@kwdef mutable struct WeaveLaTeX <: WeaveLaTeXFormat
|
||||||
tex_deps = ""
|
tex_deps = ""
|
||||||
# how to escape latex in verbatim/code environment
|
# how to escape latex in verbatim/code environment
|
||||||
escape_starter = "(*@"
|
escape_starter = "(*@"
|
||||||
escape_closer = reverse(escape_starter)
|
escape_closer = "@*)"
|
||||||
end
|
end
|
||||||
register_format!("md2tex", WeaveLaTeX())
|
register_format!("md2tex", WeaveLaTeX())
|
||||||
|
|
||||||
# will be used by `write_doc`
|
# will be used by `write_doc`
|
||||||
const DEFAULT_LATEX_CMD = ["xelatex", "-shell-escape", "-halt-on-error"]
|
const DEFAULT_LATEX_CMD = ["xelatex", "-shell-escape", "-halt-on-error"]
|
||||||
|
|
||||||
Base.@kwdef mutable struct WeaveLaTeX2PDF <: WeaveLaTeXFormat
|
|
||||||
description = "PDF via Weave-styled LaTeX"
|
|
||||||
extension = "tex"
|
|
||||||
codestart = ""
|
|
||||||
codeend = ""
|
|
||||||
termstart = codestart
|
|
||||||
termend = codeend
|
|
||||||
outputstart = "\\begin{lstlisting}"
|
|
||||||
outputend = "\\end{lstlisting}\n"
|
|
||||||
mimetypes = ["application/pdf", "image/png", "image/jpg", "text/latex", "text/markdown", "text/plain"]
|
|
||||||
fig_ext = ".pdf"
|
|
||||||
out_width = "\\linewidth"
|
|
||||||
out_height = nothing
|
|
||||||
fig_pos = nothing
|
|
||||||
fig_env = nothing
|
|
||||||
# specials
|
|
||||||
highlight_theme = nothing
|
|
||||||
template = nothing
|
|
||||||
keep_unicode = false
|
|
||||||
tex_deps = ""
|
|
||||||
latex_cmd = DEFAULT_LATEX_CMD
|
|
||||||
# how to escape latex in verbatim/code environment
|
|
||||||
escape_starter = "(*@"
|
|
||||||
escape_closer = reverse(escape_starter)
|
|
||||||
end
|
|
||||||
register_format!("md2pdf", WeaveLaTeX2PDF())
|
|
||||||
|
|
||||||
function set_format_options!(docformat::WeaveLaTeX2PDF; template = nothing, highlight_theme = nothing, keep_unicode = false, latex_cmd = DEFAULT_LATEX_CMD, _kwargs...)
|
Base.@kwdef mutable struct LaTeX2PDF <: ExportFormat
|
||||||
docformat.template =
|
primaryformat = WeaveLaTeX()
|
||||||
get_mustache_template(isnothing(template) ? normpath(TEMPLATE_DIR, "md2pdf.tpl") : template)
|
description = "PDF via LaTeX"
|
||||||
docformat.highlight_theme = get_highlight_theme(highlight_theme)
|
latex_cmd = DEFAULT_LATEX_CMD
|
||||||
docformat.keep_unicode |= keep_unicode
|
end
|
||||||
docformat.latex_cmd = latex_cmd
|
register_format!("md2pdf", LaTeX2PDF())
|
||||||
|
register_format!("minted2pdf", LaTeX2PDF(primaryformat=LaTeXMinted()))
|
||||||
|
|
||||||
|
function set_format_options!(docformat::LaTeX2PDF; latex_cmd = DEFAULT_LATEX_CMD, _kwargs...)
|
||||||
|
docformat.latex_cmd = latex_cmd
|
||||||
|
set_format_options!(docformat.primaryformat; _kwargs...)
|
||||||
end
|
end
|
||||||
|
|
56
src/run.jl
56
src/run.jl
|
@ -39,7 +39,7 @@ function run_doc(
|
||||||
|
|
||||||
# New sandbox for each document with args exposed
|
# New sandbox for each document with args exposed
|
||||||
isnothing(mod) && (mod = sandbox = Core.eval(Main, :(module $(gensym(:WeaveSandBox)) end))::Module)
|
isnothing(mod) && (mod = sandbox = Core.eval(Main, :(module $(gensym(:WeaveSandBox)) end))::Module)
|
||||||
Core.eval(mod, :(const WEAVE_ARGS = $(args)))
|
Core.eval(mod, :(WEAVE_ARGS = $(args)))
|
||||||
|
|
||||||
mimetypes = doc.format.mimetypes
|
mimetypes = doc.format.mimetypes
|
||||||
|
|
||||||
|
@ -90,6 +90,8 @@ function run_doc(
|
||||||
@info "Weaved all chunks" progress=1 _id=PROGRESS_ID
|
@info "Weaved all chunks" progress=1 _id=PROGRESS_ID
|
||||||
cd_back()
|
cd_back()
|
||||||
popdisplay(report) # ensure display pops out even if internal error occurs
|
popdisplay(report) # ensure display pops out even if internal error occurs
|
||||||
|
# Temporary fig_path is not automatically removed because it contains files so...
|
||||||
|
!isnothing(fig_path) && startswith(fig_path, "jl_") && rm(normpath(cwd, fig_path), force=true, recursive=true)
|
||||||
end
|
end
|
||||||
|
|
||||||
return doc
|
return doc
|
||||||
|
@ -140,27 +142,17 @@ function embed_figures!(chunk::CodeChunk, cwd)
|
||||||
chunk.figures[i] = img2base64(fig, cwd)
|
chunk.figures[i] = img2base64(fig, cwd)
|
||||||
end
|
end
|
||||||
end
|
end
|
||||||
|
embed_figures!(chunks, cwd) = embed_figures!.(chunks, Ref(cwd))
|
||||||
function embed_figures!(chunks::Vector{CodeChunk}, cwd)
|
|
||||||
for chunk in chunks
|
|
||||||
embed_figures!(chunk, cwd)
|
|
||||||
end
|
|
||||||
end
|
|
||||||
|
|
||||||
function img2base64(fig, cwd)
|
function img2base64(fig, cwd)
|
||||||
ext = splitext(fig)[2]
|
ext = splitext(fig)[2]
|
||||||
f = open(joinpath(cwd, fig), "r")
|
f = open(joinpath(cwd, fig), "r")
|
||||||
raw = read(f)
|
raw = read(f)
|
||||||
close(f)
|
close(f)
|
||||||
if ext == ".png"
|
return ext == ".png" ? "data:image/png;base64," * stringmime(MIME("image/png"), raw) :
|
||||||
return "data:image/png;base64," * stringmime(MIME("image/png"), raw)
|
ext == ".svg" ? "data:image/svg+xml;base64," * stringmime(MIME("image/svg"), raw) :
|
||||||
elseif ext == ".svg"
|
ext == ".gif" ? "data:image/gif;base64," * stringmime(MIME("image/gif"), raw) :
|
||||||
return "data:image/svg+xml;base64," * stringmime(MIME("image/svg"), raw)
|
fig
|
||||||
elseif ext == ".gif"
|
|
||||||
return "data:image/gif;base64," * stringmime(MIME("image/gif"), raw)
|
|
||||||
else
|
|
||||||
return (fig)
|
|
||||||
end
|
|
||||||
end
|
end
|
||||||
|
|
||||||
function run_chunk(chunk::DocChunk, doc, report, mod)
|
function run_chunk(chunk::DocChunk, doc, report, mod)
|
||||||
|
@ -274,15 +266,9 @@ function eval_chunk(doc::WeaveDoc, chunk::CodeChunk, report::Report, mod::Module
|
||||||
|
|
||||||
execute_posthooks!(chunk)
|
execute_posthooks!(chunk)
|
||||||
|
|
||||||
chunks = if chunk.options[:term]
|
return chunk.options[:term] ? collect_term_results(chunk) :
|
||||||
collect_term_results(chunk)
|
chunk.options[:hold] ? collect_hold_results(chunk) :
|
||||||
elseif chunk.options[:hold]
|
collect_results(chunk)
|
||||||
collect_hold_results(chunk)
|
|
||||||
else
|
|
||||||
collect_results(chunk)
|
|
||||||
end
|
|
||||||
|
|
||||||
return chunks
|
|
||||||
end
|
end
|
||||||
|
|
||||||
# Hooks to run before and after chunks, this is form IJulia,
|
# Hooks to run before and after chunks, this is form IJulia,
|
||||||
|
@ -293,7 +279,11 @@ function pop_preexecution_hook!(f::Function)
|
||||||
isnothing(i) && error("this function has not been registered in the pre-execution hook yet")
|
isnothing(i) && error("this function has not been registered in the pre-execution hook yet")
|
||||||
return splice!(preexecution_hooks, i)
|
return splice!(preexecution_hooks, i)
|
||||||
end
|
end
|
||||||
execute_prehooks!(chunk::CodeChunk) = for prehook in preexecution_hooks; Base.invokelatest(prehook, chunk); end
|
function execute_prehooks!(chunk::CodeChunk)
|
||||||
|
for prehook in preexecution_hooks
|
||||||
|
Base.invokelatest(prehook, chunk)
|
||||||
|
end
|
||||||
|
end
|
||||||
|
|
||||||
const postexecution_hooks = Function[]
|
const postexecution_hooks = Function[]
|
||||||
push_postexecution_hook!(f::Function) = push!(postexecution_hooks, f)
|
push_postexecution_hook!(f::Function) = push!(postexecution_hooks, f)
|
||||||
|
@ -302,7 +292,11 @@ function pop_postexecution_hook!(f::Function)
|
||||||
isnothing(i) && error("this function has not been registered in the post-execution hook yet")
|
isnothing(i) && error("this function has not been registered in the post-execution hook yet")
|
||||||
return splice!(postexecution_hooks, i)
|
return splice!(postexecution_hooks, i)
|
||||||
end
|
end
|
||||||
execute_posthooks!(chunk::CodeChunk) = for posthook in postexecution_hooks; Base.invokelatest(posthook, chunk); end
|
function execute_posthooks!(chunk::CodeChunk)
|
||||||
|
for posthook in postexecution_hooks
|
||||||
|
Base.invokelatest(posthook, chunk)
|
||||||
|
end
|
||||||
|
end
|
||||||
|
|
||||||
"""
|
"""
|
||||||
clear_module!(mod::Module)
|
clear_module!(mod::Module)
|
||||||
|
@ -341,11 +335,7 @@ function get_figname(report::Report, chunk; fignum = nothing, ext = nothing)
|
||||||
end
|
end
|
||||||
|
|
||||||
function set_rc_params(doc::WeaveDoc, fig_path, fig_ext)
|
function set_rc_params(doc::WeaveDoc, fig_path, fig_ext)
|
||||||
if isnothing(fig_ext)
|
doc.chunk_defaults[:fig_ext] = isnothing(fig_ext) ? doc.format.fig_ext : fig_ext
|
||||||
doc.chunk_defaults[:fig_ext] = doc.format.fig_ext
|
|
||||||
else
|
|
||||||
doc.chunk_defaults[:fig_ext] = fig_ext
|
|
||||||
end
|
|
||||||
doc.chunk_defaults[:fig_path] = fig_path
|
doc.chunk_defaults[:fig_path] = fig_path
|
||||||
end
|
end
|
||||||
|
|
||||||
|
@ -363,9 +353,9 @@ function collect_results(chunk::CodeChunk)
|
||||||
chunk.optionstring,
|
chunk.optionstring,
|
||||||
copy(chunk.options),
|
copy(chunk.options),
|
||||||
)
|
)
|
||||||
rchunk.figures = r.figures
|
|
||||||
rchunk.output = r.stdout
|
rchunk.output = r.stdout
|
||||||
rchunk.rich_output = r.rich_output
|
rchunk.rich_output = r.rich_output
|
||||||
|
rchunk.figures = r.figures
|
||||||
push!(result_chunks, rchunk)
|
push!(result_chunks, rchunk)
|
||||||
content = ""
|
content = ""
|
||||||
end
|
end
|
||||||
|
|
|
@ -1,4 +1,4 @@
|
||||||
function write_doc(docformat::WeaveLaTeX2PDF, doc, rendered, out_path)
|
function write_doc(docformat::LaTeX2PDF, doc, rendered, out_path)
|
||||||
cd_back = let d = pwd(); () -> cd(d); end
|
cd_back = let d = pwd(); () -> cd(d); end
|
||||||
cd(doc.cwd)
|
cd(doc.cwd)
|
||||||
try
|
try
|
||||||
|
|
|
@ -61,7 +61,7 @@ function write_doc(docformat::Pandoc2PDF, doc, rendered, out_path)
|
||||||
cmd = `pandoc -f markdown+raw_tex -s --pdf-engine=xelatex --highlight-style=tango
|
cmd = `pandoc -f markdown+raw_tex -s --pdf-engine=xelatex --highlight-style=tango
|
||||||
$filt $citeproc $(docformat.pandoc_options)
|
$filt $citeproc $(docformat.pandoc_options)
|
||||||
--include-in-header=$(docformat.header_template)
|
--include-in-header=$(docformat.header_template)
|
||||||
-V fontsize=12pt -o $(out)`
|
-o $(out)`
|
||||||
proc = open(cmd, "r+")
|
proc = open(cmd, "r+")
|
||||||
println(proc.in, rendered)
|
println(proc.in, rendered)
|
||||||
close(proc.in)
|
close(proc.in)
|
||||||
|
|
|
@ -3,7 +3,7 @@ using Weave.Dates
|
||||||
|
|
||||||
test_doctypes = filter(first.(Weave.list_out_formats())) do doctype
|
test_doctypes = filter(first.(Weave.list_out_formats())) do doctype
|
||||||
# don't test doctypes which need external programs
|
# don't test doctypes which need external programs
|
||||||
doctype ∉ ("pandoc2html", "pandoc2pdf", "md2pdf")
|
doctype ∉ ("pandoc2html", "pandoc2pdf", "md2pdf", "minted2pdf")
|
||||||
end
|
end
|
||||||
|
|
||||||
function test_func(body)
|
function test_func(body)
|
||||||
|
@ -24,7 +24,6 @@ using Dates
|
||||||
Date(now())
|
Date(now())
|
||||||
```
|
```
|
||||||
"""
|
"""
|
||||||
|
|
||||||
for doctype in test_doctypes
|
for doctype in test_doctypes
|
||||||
test_mock_weave(test_func, julia_markdown_body; informat = "markdown", doctype = doctype)
|
test_mock_weave(test_func, julia_markdown_body; informat = "markdown", doctype = doctype)
|
||||||
end
|
end
|
||||||
|
|
|
@ -72,6 +72,10 @@ let opts = get_options("```julia, opt1 = 1, opt2 = \"2\"\n```")
|
||||||
@test (:opt1 => 1) in opts
|
@test (:opt1 => 1) in opts
|
||||||
@test (:opt2 => "2") in opts
|
@test (:opt2 => "2") in opts
|
||||||
end
|
end
|
||||||
|
let opts = get_options("```julia{opt1 = 1, opt2 = \"2\"}\n```")
|
||||||
|
@test (:opt1 => 1) in opts
|
||||||
|
@test (:opt2 => "2") in opts
|
||||||
|
end
|
||||||
|
|
||||||
end
|
end
|
||||||
|
|
||||||
|
|
|
@ -46,4 +46,14 @@ Core.eval(m, :(const a = $ary))
|
||||||
Weave.clear_module!(m)
|
Weave.clear_module!(m)
|
||||||
@test_broken Base.summarysize(m) < size
|
@test_broken Base.summarysize(m) < size
|
||||||
|
|
||||||
|
julia_markdown_body = """
|
||||||
|
this is just to test the `out_path` option
|
||||||
|
"""
|
||||||
|
|
||||||
|
f_in = tempname()
|
||||||
|
f_out = tempname() * ".md"
|
||||||
|
write(f_in, julia_markdown_body)
|
||||||
|
f = weave(f_in; out_path=f_out)
|
||||||
|
@test isfile(f_out)
|
||||||
|
|
||||||
end # @testset "clear_module!"
|
end # @testset "clear_module!"
|
||||||
|
|
|
@ -6,18 +6,18 @@
|
||||||
doc = mock_run("""
|
doc = mock_run("""
|
||||||
```julia
|
```julia
|
||||||
using DataFrames
|
using DataFrames
|
||||||
DataFrame(rand(10,3))
|
DataFrame(a=rand(10))
|
||||||
```
|
```
|
||||||
"""; doctype = "md2html")
|
"""; doctype = "md2html")
|
||||||
@test isdefined(doc.chunks[1], :rich_output)
|
@test isdefined(doc.chunks[1], :rich_output)
|
||||||
@test count("<tr>", doc.chunks[1].rich_output) == 12 # additonal 2 for name and type row
|
@test count("<tr", doc.chunks[1].rich_output) == 12 # additonal 2 for name and type row
|
||||||
|
|
||||||
# limit
|
# limit
|
||||||
n = 100000
|
n = 100000
|
||||||
doc = mock_run("""
|
doc = mock_run("""
|
||||||
```julia
|
```julia
|
||||||
using DataFrames
|
using DataFrames
|
||||||
DataFrame(rand($n,3))
|
DataFrame(a=rand($n))
|
||||||
```
|
```
|
||||||
"""; doctype = "md2html")
|
"""; doctype = "md2html")
|
||||||
@test isdefined(doc.chunks[1], :rich_output)
|
@test isdefined(doc.chunks[1], :rich_output)
|
||||||
|
|
Loading…
Reference in New Issue