gnu: Add r-riboprofiling.
* gnu/packages/bioconductor.scm (r-riboprofiling): New variable.
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@ -536,3 +536,42 @@ sites across multiple conditions considering matching control in ChIP-seq
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datasets.")
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datasets.")
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;; Any version of the GPL.
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;; Any version of the GPL.
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public r-riboprofiling
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(package
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(name "r-riboprofiling")
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(version "1.10.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "RiboProfiling" version))
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(sha256
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(base32
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"04yjklqdjkim7yxyk3cyvf0mmwyxyfvw2mmfzgwaaqbiyg29sli0"))))
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(properties `((upstream-name . "RiboProfiling")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-data-table" ,r-data-table)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-ggbio" ,r-ggbio)
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("r-ggplot2" ,r-ggplot2)
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("r-iranges" ,r-iranges)
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("r-plyr" ,r-plyr)
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("r-reshape2" ,r-reshape2)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-sqldf" ,r-sqldf)))
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(home-page "https://bioconductor.org/packages/RiboProfiling/")
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(synopsis "Ribosome profiling data analysis")
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(description "Starting with a BAM file, this package provides the
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necessary functions for quality assessment, read start position recalibration,
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the counting of genomic sequence reads on CDS, 3'UTR, and 5'UTR, and plotting
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of count data: pairs, log fold-change, codon frequency and coverage
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assessment, principal component analysis on codon coverage.")
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(license license:gpl3)))
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