gnu: Add r-riboprofiling.

* gnu/packages/bioconductor.scm (r-riboprofiling): New variable.
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Ricardo Wurmus 2018-06-15 07:38:17 +02:00
parent 609f4ad12f
commit 0490f9de88
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@ -536,3 +536,42 @@ sites across multiple conditions considering matching control in ChIP-seq
datasets.") datasets.")
;; Any version of the GPL. ;; Any version of the GPL.
(license license:gpl3+))) (license license:gpl3+)))
(define-public r-riboprofiling
(package
(name "r-riboprofiling")
(version "1.10.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "RiboProfiling" version))
(sha256
(base32
"04yjklqdjkim7yxyk3cyvf0mmwyxyfvw2mmfzgwaaqbiyg29sli0"))))
(properties `((upstream-name . "RiboProfiling")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-data-table" ,r-data-table)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-ggbio" ,r-ggbio)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-plyr" ,r-plyr)
("r-reshape2" ,r-reshape2)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-sqldf" ,r-sqldf)))
(home-page "https://bioconductor.org/packages/RiboProfiling/")
(synopsis "Ribosome profiling data analysis")
(description "Starting with a BAM file, this package provides the
necessary functions for quality assessment, read start position recalibration,
the counting of genomic sequence reads on CDS, 3'UTR, and 5'UTR, and plotting
of count data: pairs, log fold-change, codon frequency and coverage
assessment, principal component analysis on codon coverage.")
(license license:gpl3)))