gnu: Add r-delayedmatrixstats.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): New variable.
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@ -10626,6 +10626,38 @@ cell-specific biases, assignment of cell cycle phase, and detection of highly
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variable and significantly correlated genes.")
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(license license:gpl3)))
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(define-public r-delayedmatrixstats
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(package
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(name "r-delayedmatrixstats")
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(version "1.0.2")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "DelayedMatrixStats" version))
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(sha256
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(base32
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"1nfdan0k2z4mynxyblsil0cjclsy63b0w9r1hczfk27i8hmxx13h"))))
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(properties
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`((upstream-name . "DelayedMatrixStats")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-delayedarray" ,r-delayedarray)
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("r-iranges" ,r-iranges)
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("r-matrix" ,r-matrix)
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("r-matrixstats" ,r-matrixstats)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://github.com/PeteHaitch/DelayedMatrixStats")
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(synopsis "Functions that apply to rows and columns of DelayedMatrix objects")
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(description
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"This package provides a port of the @code{matrixStats} API for use with
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@code{DelayedMatrix} objects from the @code{DelayedArray} package. It
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contains high-performing functions operating on rows and columns of
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@code{DelayedMatrix} objects, e.g. @code{colMedians}, @code{rowMedians},
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@code{colRanks}, @code{rowRanks}, @code{colSds}, and @code{rowSds}. Functions
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are optimized per data type and for subsetted calculations such that both
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memory usage and processing time is minimized.")
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(license license:expat)))
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(define htslib-for-sambamba
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(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
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(package
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