gnu: r-rcpparmadillo: Update to 0.7.700.0.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0. [source]: Do not delete bundled armadillo sources, because upstream no longer hosts previous versions. [propagated-inputs]: Remove "armadillo-for-rcpparmadillo". [arguments]: Remove because we no longer need to link with the armadillo library. * gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no longer need to link with armadillo library.
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@ -5497,14 +5497,6 @@ high-throughput sequencing experiments.")
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"1walwkqryn1gnwz7zryr5764a0p6ia7ag4w6w9n8fskg8dkg0fqs"))))
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(properties `((upstream-name . "DESeq2")))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'link-against-armadillo
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(lambda _
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(substitute* "src/Makevars"
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(("PKG_LIBS =" prefix)
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(string-append prefix "-larmadillo"))))))))
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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@ -2443,32 +2443,17 @@ well as additional utilities such as panel and axis annotation functions.")
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(define-public r-rcpparmadillo
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(package
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(name "r-rcpparmadillo")
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(version "0.7.600.1.0")
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(version "0.7.700.0.0")
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(source (origin
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(method url-fetch)
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(uri (cran-uri "RcppArmadillo" version))
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(sha256
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(base32
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"0k1wniip184j0ckcg9kcjy2q4mcfj5jpd1nkk4l0ab75ad8znywv"))
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(modules '((guix build utils)))
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;; Remove bundled armadillo sources
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(snippet
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'(begin
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(delete-file-recursively "inst/include/armadillo_bits")
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(delete-file "inst/include/armadillo")))))
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"03cvl2xgmvh4sylw7ff7s020y7k2wzyj34l0zngm09qs44pa9q0m"))))
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(properties `((upstream-name . "RcppArmadillo")))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'link-against-armadillo
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(lambda _
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(substitute* "src/Makevars"
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(("PKG_LIBS=" prefix)
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(string-append prefix "-larmadillo"))))))))
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(propagated-inputs
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`(("r-rcpp" ,r-rcpp)
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("armadillo" ,armadillo-for-rcpparmadillo)))
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`(("r-rcpp" ,r-rcpp)))
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(home-page "https://github.com/RcppCore/RcppArmadillo")
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(synopsis "Rcpp integration for the Armadillo linear algebra library")
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(description
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