gnu: bowtie: Use 'modify-phases'.
* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Use 'modify-phases' syntax.
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@ -1225,16 +1225,14 @@ errors at the end of reads.")
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"WITH_TBB=1"
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(string-append "prefix=" (assoc-ref %outputs "out")))
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#:phases
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(alist-delete
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'configure
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(alist-replace
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'check
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(lambda* (#:key outputs #:allow-other-keys)
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(system* "perl"
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"scripts/test/simple_tests.pl"
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"--bowtie2=./bowtie2"
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"--bowtie2-build=./bowtie2-build"))
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%standard-phases))))
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(modify-phases %standard-phases
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(delete 'configure)
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(replace 'check
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(lambda* (#:key outputs #:allow-other-keys)
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(zero? (system* "perl"
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"scripts/test/simple_tests.pl"
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"--bowtie2=./bowtie2"
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"--bowtie2-build=./bowtie2-build")))))))
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(home-page "http://bowtie-bio.sourceforge.net/bowtie2/index.shtml")
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(synopsis "Fast and sensitive nucleotide sequence read aligner")
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(description
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