gnu: pigx-scrnaseq: Update to 0.0.6.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.6. [arguments]: Remove "wrap-executable" phase.
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@ -13027,7 +13027,7 @@ methylation and segmentation.")
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(define-public pigx-scrnaseq
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(package
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(name "pigx-scrnaseq")
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(version "0.0.5")
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(version "0.0.6")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/BIMSBbioinfo/pigx_scrnaseq/"
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@ -13035,24 +13035,14 @@ methylation and segmentation.")
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"/pigx_scrnaseq-" version ".tar.gz"))
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(sha256
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(base32
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"0a73rilv0vnw42d5rsdq205h4f0x8j3jqv998janh4s324c6w2kj"))))
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"0fvdymnka598z2ka7zk6rwrf9dq89p5lyd2y9swvyg72hn1jwjai"))))
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(build-system gnu-build-system)
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(arguments
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`(#:configure-flags
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(list (string-append "PICARDJAR=" (assoc-ref %build-inputs "java-picard")
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"/share/java/picard.jar")
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(string-append "DROPSEQJAR=" (assoc-ref %build-inputs "dropseq-tools")
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"/share/java/dropseq.jar"))
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#:phases
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(modify-phases %standard-phases
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(add-after 'install 'wrap-executable
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;; Make sure the executable finds all R modules.
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
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(wrap-program (string-append out "/bin/pigx-scrnaseq")
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`("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))
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`("PYTHONPATH" ":" = (,(getenv "PYTHONPATH")))))
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#t)))))
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"/share/java/dropseq.jar"))))
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(inputs
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`(("coreutils" ,coreutils)
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("perl" ,perl)
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