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gnu: pigx-scrnaseq: Update to 0.0.6. 

* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.6.
[arguments]: Remove "wrap-executable" phase.
This commit is contained in:
Ricardo Wurmus 2018-07-05 00:50:28 +02:00
parent 137bd98353
commit 08d1a8b138
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1 changed files with 3 additions and 13 deletions
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@ -13027,7 +13027,7 @@ methylation and segmentation.")
(define-public pigx-scrnaseq (define-public pigx-scrnaseq
(package (package
(name "pigx-scrnaseq") (name "pigx-scrnaseq")
(version "0.0.5") (version "0.0.6")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_scrnaseq/" (uri (string-append "https://github.com/BIMSBbioinfo/pigx_scrnaseq/"
@ -13035,24 +13035,14 @@ methylation and segmentation.")
"/pigx_scrnaseq-" version ".tar.gz")) "/pigx_scrnaseq-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"0a73rilv0vnw42d5rsdq205h4f0x8j3jqv998janh4s324c6w2kj")))) "0fvdymnka598z2ka7zk6rwrf9dq89p5lyd2y9swvyg72hn1jwjai"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:configure-flags `(#:configure-flags
(list (string-append "PICARDJAR=" (assoc-ref %build-inputs "java-picard") (list (string-append "PICARDJAR=" (assoc-ref %build-inputs "java-picard")
"/share/java/picard.jar") "/share/java/picard.jar")
(string-append "DROPSEQJAR=" (assoc-ref %build-inputs "dropseq-tools") (string-append "DROPSEQJAR=" (assoc-ref %build-inputs "dropseq-tools")
"/share/java/dropseq.jar")) "/share/java/dropseq.jar"))))
#:phases
(modify-phases %standard-phases
(add-after 'install 'wrap-executable
;; Make sure the executable finds all R modules.
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(wrap-program (string-append out "/bin/pigx-scrnaseq")
`("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))
`("PYTHONPATH" ":" = (,(getenv "PYTHONPATH")))))
#t)))))
(inputs (inputs
`(("coreutils" ,coreutils) `(("coreutils" ,coreutils)
("perl" ,perl) ("perl" ,perl)