gnu: Add r-lumi.
* gnu/packages/bioconductor.scm (r-lumi): New variable.
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@ -2359,3 +2359,42 @@ HumanMethylation27 and HumanMethylation450 microarrays. Normalization,
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background correction, and quality control features for GoldenGate, Infinium,
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and Infinium HD arrays are also included.")
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(license license:gpl2)))
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(define-public r-lumi
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(package
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(name "r-lumi")
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(version "2.34.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "lumi" version))
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(sha256
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(base32
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"1fpmjpgcy5n0hx9whn9m3jhjmciqq0l59nvy5addbq0a4wnjhx8q"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-affy" ,r-affy)
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("r-annotate" ,r-annotate)
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("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-dbi" ,r-dbi)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-kernsmooth" ,r-kernsmooth)
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("r-lattice" ,r-lattice)
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("r-mass" ,r-mass)
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("r-methylumi" ,r-methylumi)
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("r-mgcv" ,r-mgcv)
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("r-nleqslv" ,r-nleqslv)
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("r-preprocesscore" ,r-preprocesscore)
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("r-rsqlite" ,r-rsqlite)))
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(home-page "https://bioconductor.org/packages/lumi")
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(synopsis "BeadArray-specific methods for Illumina methylation and expression microarrays")
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(description
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"The lumi package provides an integrated solution for the Illumina
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microarray data analysis. It includes functions of Illumina
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BeadStudio (GenomeStudio) data input, quality control, BeadArray-specific
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variance stabilization, normalization and gene annotation at the probe level.
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It also includes the functions of processing Illumina methylation microarrays,
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especially Illumina Infinium methylation microarrays.")
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(license license:lgpl2.0+)))
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