gnu: Add r-lumi.

* gnu/packages/bioconductor.scm (r-lumi): New variable.
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Ricardo Wurmus 2019-03-13 13:35:40 +01:00
parent 5ec5ba0272
commit 09605cb2d1
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@ -2359,3 +2359,42 @@ HumanMethylation27 and HumanMethylation450 microarrays. Normalization,
background correction, and quality control features for GoldenGate, Infinium,
and Infinium HD arrays are also included.")
(license license:gpl2)))
(define-public r-lumi
(package
(name "r-lumi")
(version "2.34.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "lumi" version))
(sha256
(base32
"1fpmjpgcy5n0hx9whn9m3jhjmciqq0l59nvy5addbq0a4wnjhx8q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-affy" ,r-affy)
("r-annotate" ,r-annotate)
("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-dbi" ,r-dbi)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-kernsmooth" ,r-kernsmooth)
("r-lattice" ,r-lattice)
("r-mass" ,r-mass)
("r-methylumi" ,r-methylumi)
("r-mgcv" ,r-mgcv)
("r-nleqslv" ,r-nleqslv)
("r-preprocesscore" ,r-preprocesscore)
("r-rsqlite" ,r-rsqlite)))
(home-page "https://bioconductor.org/packages/lumi")
(synopsis "BeadArray-specific methods for Illumina methylation and expression microarrays")
(description
"The lumi package provides an integrated solution for the Illumina
microarray data analysis. It includes functions of Illumina
BeadStudio (GenomeStudio) data input, quality control, BeadArray-specific
variance stabilization, normalization and gene annotation at the probe level.
It also includes the functions of processing Illumina methylation microarrays,
especially Illumina Infinium methylation microarrays.")
(license license:lgpl2.0+)))