gnu: bismark: Fix references to gunzip.
* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to gunzip executable. [inputs]: Add gzip.
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@ -11514,7 +11514,7 @@ Browser.")
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(delete 'configure)
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(delete 'build)
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out")
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"/bin"))
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(docdir (string-append (assoc-ref outputs "out")
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@ -11537,7 +11537,16 @@ Browser.")
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scripts)
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(for-each (lambda (file) (install-file file docdir))
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docs)
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;; Fix references to gunzip
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(substitute* (map (lambda (file)
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(string-append bin "/" file))
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scripts)
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(("\"gunzip -c")
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(string-append "\"" (assoc-ref inputs "gzip")
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"/bin/gunzip -c")))
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#t))))))
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(inputs
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`(("gzip" ,gzip)))
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(home-page "http://www.bioinformatics.babraham.ac.uk/projects/bismark/")
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(synopsis "Map bisulfite treated sequence reads and analyze methylation")
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(description "Bismark is a program to map bisulfite treated sequencing
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