gnu: Add r-ruvseq.

* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
This commit is contained in:
Ricardo Wurmus 2018-10-22 13:00:06 +02:00
parent 318ec0a896
commit 09aa3d063a
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 26 additions and 0 deletions

View File

@ -913,3 +913,29 @@ can be analyzed regarding their minimal, maximal and average distances between
barcodes. Finally, reads that start with a (possibly mutated) barcode can be
demultiplexed, i.e. assigned to their original reference barcode.")
(license license:gpl2)))
(define-public r-ruvseq
(package
(name "r-ruvseq")
(version "1.14.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "RUVSeq" version))
(sha256
(base32
"16i5sm5af761k4zvspfi8jknsgln48bn538hxqqmlaq7wvlfxqxj"))))
(properties `((upstream-name . "RUVSeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-edaseq" ,r-edaseq)
("r-edger" ,r-edger)
("r-mass" ,r-mass)))
(home-page "https://github.com/drisso/RUVSeq")
(synopsis "Remove unwanted variation from RNA-Seq data")
(description
"This package implements methods to @dfn{remove unwanted variation} (RUV)
of Risso et al. (2014) for the normalization of RNA-Seq read counts between
samples.")
(license license:artistic2.0)))