gnu: Add r-msigdbr.

* gnu/packages/cran.scm (r-msigdbr): New variable.
This commit is contained in:
Ricardo Wurmus 2019-03-27 15:20:48 +01:00
parent 2d70460892
commit 0d50d0df08
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 31 additions and 0 deletions

View File

@ -13066,3 +13066,34 @@ The extrafont package makes both of these things easier.")
"This package provides the means to plot ggplot2 graphs in the style of "This package provides the means to plot ggplot2 graphs in the style of
the XKCD web comic.") the XKCD web comic.")
(license license:gpl3))) (license license:gpl3)))
(define-public r-msigdbr
(package
(name "r-msigdbr")
(version "6.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "msigdbr" version))
(sha256
(base32
"1264j1hs74kq7hyh68vfynadfi6mdpq46qm1hnwzkzzhmbzpb9cg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-magrittr" ,r-magrittr)
("r-rlang" ,r-rlang)
("r-tibble" ,r-tibble)))
(home-page "https://github.com/igordot/msigdbr")
(synopsis "MSigDB gene sets for multiple organisms")
(description
"This package provides the @dfn{Molecular Signatures Database} (MSigDB)
gene sets typically used with the @dfn{Gene Set Enrichment Analysis} (GSEA)
software in a standard R data frame with key-value pairs. Included are the
original human gene symbols and Entrez IDs as well as the equivalents for
various frequently studied model organisms such as mouse, rat, pig, fly, and
yeast.")
;; The package is covered under the Expat license, but the upstream MSigDB
;; files are made available under the Creative Commons Attribution 4.0
;; International license.
(license (list license:expat license:cc-by4.0))))