gnu: bedtools: Update to 2.27.0.
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.27.0. [arguments]: Remove custom "install" phase; specify prefix.
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@ -421,31 +421,27 @@ computational cluster.")
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(define-public bedtools
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(package
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(name "bedtools")
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(version "2.26.0")
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(version "2.27.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/arq5x/bedtools2/archive/v"
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version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(uri (string-append "https://github.com/arq5x/bedtools2/releases/"
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"download/v" version "/"
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"bedtools-" version ".tar.gz"))
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(sha256
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(base32
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"0xvri5hnp2iim1cx6mcd5d9f102p5ql41x69rd6106x1c17pinqm"))))
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"0q6fsiz4s52yzxs6h2vxwq95fsi3n64wkpinkk05mfh4dmhybw74"))))
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(build-system gnu-build-system)
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(native-inputs `(("python" ,python-2)))
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(inputs `(("samtools" ,samtools)
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("zlib" ,zlib)))
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(arguments
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'(#:test-target "test"
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#:make-flags
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(list (string-append "prefix=" (assoc-ref %outputs "out")))
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#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
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(for-each (lambda (file)
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(install-file file bin))
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(find-files "bin" ".*")))
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#t)))))
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(delete 'configure))))
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(native-inputs `(("python" ,python-2)))
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(inputs
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`(("samtools" ,samtools)
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("zlib" ,zlib)))
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(home-page "https://github.com/arq5x/bedtools2")
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(synopsis "Tools for genome analysis and arithmetic")
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(description
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