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gnu: bedtools: Update to 2.27.0. 

* gnu/packages/bioinformatics.scm (bedtools): Update to 2.27.0.
[arguments]: Remove custom "install" phase; specify prefix.
This commit is contained in:
Ricardo Wurmus 2017-12-06 19:12:16 +01:00
parent 7bcfb590a6
commit 0d9824cc12
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1 changed files with 12 additions and 16 deletions
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@ -421,31 +421,27 @@ computational cluster.")
(define-public bedtools (define-public bedtools
(package (package
(name "bedtools") (name "bedtools")
(version "2.26.0") (version "2.27.0")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/arq5x/bedtools2/archive/v" (uri (string-append "https://github.com/arq5x/bedtools2/releases/"
version ".tar.gz")) "download/v" version "/"
(file-name (string-append name "-" version ".tar.gz")) "bedtools-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"0xvri5hnp2iim1cx6mcd5d9f102p5ql41x69rd6106x1c17pinqm")))) "0q6fsiz4s52yzxs6h2vxwq95fsi3n64wkpinkk05mfh4dmhybw74"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(native-inputs `(("python" ,python-2)))
(inputs `(("samtools" ,samtools)
("zlib" ,zlib)))
(arguments (arguments
'(#:test-target "test" '(#:test-target "test"
#:make-flags
(list (string-append "prefix=" (assoc-ref %outputs "out")))
#:phases #:phases
(modify-phases %standard-phases (modify-phases %standard-phases
(delete 'configure) (delete 'configure))))
(replace 'install (native-inputs `(("python" ,python-2)))
(lambda* (#:key outputs #:allow-other-keys) (inputs
(let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) `(("samtools" ,samtools)
(for-each (lambda (file) ("zlib" ,zlib)))
(install-file file bin))
(find-files "bin" ".*")))
#t)))))
(home-page "https://github.com/arq5x/bedtools2") (home-page "https://github.com/arq5x/bedtools2")
(synopsis "Tools for genome analysis and arithmetic") (synopsis "Tools for genome analysis and arithmetic")
(description (description