gnu: Add XVector.

* gnu/packages/bioinformatics.scm (r-xvector): New variable.
This commit is contained in:
Ricardo Wurmus 2015-12-18 12:08:22 +01:00
parent bf7764b74f
commit 0e7d5560de
1 changed files with 37 additions and 0 deletions

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@ -3272,6 +3272,43 @@ translation between different chromosome sequence naming conventions (e.g.,
names in their natural, rather than lexicographic, order.")
(license license:artistic2.0)))
(define-public r-xvector
(package
(name "r-xvector")
(version "0.10.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "XVector" version))
(sha256
(base32
"0havwyr6xqk7w0rmbwfj9jq1djz7wzdz7w39adhklwzwz9l4ih3a"))))
(properties
`((upstream-name . "XVector")
(r-repository . bioconductor)))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'use-system-zlib
(lambda _
(substitute* "DESCRIPTION"
(("zlibbioc, ") ""))
(substitute* "NAMESPACE"
(("import\\(zlibbioc\\)") ""))
#t)))))
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-iranges" ,r-iranges)
("r-s4vectors" ,r-s4vectors)))
(home-page "http://bioconductor.org/packages/XVector")
(synopsis "Representation and manpulation of external sequences")
(description
"This package provides memory efficient S4 classes for storing sequences
\"externally\" (behind an R external pointer, or on disk).")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")