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gnu: miso: Install executables. 

* gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use
  "setuptools" so that executables are built.
* gnu/packages/bioinformatics.scm (miso)[native-inputs]: Add "python2-mock"
  and "python2-pytz".
master
Ricardo Wurmus 2015-06-17 12:14:39 +02:00
parent c4325f6269
commit 0ec8b206d4
1 changed files with 7 additions and 2 deletions
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gnu/packages/bioinformatics.scm
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@ -1230,9 +1230,12 @@ sequencing tag position and orientation.")
(base32
"0x446867az8ir0z8c1vjqffkp0ma37wm4sylixnkhgawllzx8v5w"))
(modules '((guix build utils)))
;; use "gcc" instead of "cc" for compilation
(snippet
'(substitute* "setup.py"
;; Use setuptools, or else the executables are not
;; installed.
(("distutils.core") "setuptools")
;; use "gcc" instead of "cc" for compilation
(("^defines")
"cc.set_executables(
compiler='gcc',
@ -1250,7 +1253,9 @@ linker_so='gcc -shared'); defines")))))
("python-scipy" ,python2-scipy)
("python-matplotlib" ,python2-matplotlib)))
(native-inputs
`(("python-setuptools" ,python2-setuptools)))
`(("python-mock" ,python2-mock) ;for tests
("python-pytz" ,python2-pytz) ;for tests
("python-setuptools" ,python2-setuptools)))
(home-page "http://genes.mit.edu/burgelab/miso/index.html")
(synopsis "Mixture of Isoforms model for RNA-Seq isoform quantitation")
(description