gnu: miso: Install executables.
* gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use "setuptools" so that executables are built. * gnu/packages/bioinformatics.scm (miso)[native-inputs]: Add "python2-mock" and "python2-pytz".master
parent
c4325f6269
commit
0ec8b206d4
|
@ -1230,9 +1230,12 @@ sequencing tag position and orientation.")
|
||||||
(base32
|
(base32
|
||||||
"0x446867az8ir0z8c1vjqffkp0ma37wm4sylixnkhgawllzx8v5w"))
|
"0x446867az8ir0z8c1vjqffkp0ma37wm4sylixnkhgawllzx8v5w"))
|
||||||
(modules '((guix build utils)))
|
(modules '((guix build utils)))
|
||||||
;; use "gcc" instead of "cc" for compilation
|
|
||||||
(snippet
|
(snippet
|
||||||
'(substitute* "setup.py"
|
'(substitute* "setup.py"
|
||||||
|
;; Use setuptools, or else the executables are not
|
||||||
|
;; installed.
|
||||||
|
(("distutils.core") "setuptools")
|
||||||
|
;; use "gcc" instead of "cc" for compilation
|
||||||
(("^defines")
|
(("^defines")
|
||||||
"cc.set_executables(
|
"cc.set_executables(
|
||||||
compiler='gcc',
|
compiler='gcc',
|
||||||
|
@ -1250,7 +1253,9 @@ linker_so='gcc -shared'); defines")))))
|
||||||
("python-scipy" ,python2-scipy)
|
("python-scipy" ,python2-scipy)
|
||||||
("python-matplotlib" ,python2-matplotlib)))
|
("python-matplotlib" ,python2-matplotlib)))
|
||||||
(native-inputs
|
(native-inputs
|
||||||
`(("python-setuptools" ,python2-setuptools)))
|
`(("python-mock" ,python2-mock) ;for tests
|
||||||
|
("python-pytz" ,python2-pytz) ;for tests
|
||||||
|
("python-setuptools" ,python2-setuptools)))
|
||||||
(home-page "http://genes.mit.edu/burgelab/miso/index.html")
|
(home-page "http://genes.mit.edu/burgelab/miso/index.html")
|
||||||
(synopsis "Mixture of Isoforms model for RNA-Seq isoform quantitation")
|
(synopsis "Mixture of Isoforms model for RNA-Seq isoform quantitation")
|
||||||
(description
|
(description
|
||||||
|
|
Loading…
Reference in New Issue