gnu: Add r-qdnaseq.

* gnu/packages/bioconductor.scm (r-qdnaseq): New variable.
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Roel Janssen 2018-04-24 14:12:32 +02:00
parent 67ee83d6c3
commit 0ef8cc9c1c
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@ -298,3 +298,34 @@ the @code{arrayCGH} packages.")
(description "This package contains functions and classes that are needed by
@code{arrayCGH} packages.")
(license license:gpl2+)))
(define-public r-qdnaseq
(package
(name "r-qdnaseq")
(version "1.14.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "QDNAseq" version))
(sha256
(base32 "0lgbv4s0xqgrs7q6ynb3c273sf7pyrp51jnc8ravq1z5g0a2zshy"))))
(properties `((upstream-name . "QDNAseq")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-cghbase" ,r-cghbase)
("r-cghcall" ,r-cghcall)
("r-dnacopy" ,r-dnacopy)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrixstats" ,r-matrixstats)
("r-r-utils" ,r-r-utils)
("r-rsamtools" ,r-rsamtools)))
(home-page "http://bioconductor.org/packages/QDNAseq")
(synopsis "Quantitative DNA sequencing for chromosomal aberrations")
(description "The genome is divided into non-overlapping fixed-sized bins,
number of sequence reads in each counted, adjusted with a simultaneous
two-dimensional loess correction for sequence mappability and GC content, and
filtered to remove spurious regions in the genome. Downstream steps of
segmentation and calling are also implemented via packages DNAcopy and CGHcall,
respectively.")
(license license:gpl2+)))