gnu: Add r-fdb-infiniummethylation-hg19.

* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
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Ricardo Wurmus 2019-03-13 13:35:18 +01:00
parent 86fded86c2
commit 0f5c9cec50
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@ -650,6 +650,38 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
based on the knownGene track.") based on the knownGene track.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-fdb-infiniummethylation-hg19
(package
(name "r-fdb-infiniummethylation-hg19")
(version "2.2.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"FDb.InfiniumMethylation.hg19_"
version ".tar.gz"))
(sha256
(base32
"0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"))))
(properties
`((upstream-name . "FDb.InfiniumMethylation.hg19")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-genomicfeatures" ,r-genomicfeatures)
("r-annotationdbi" ,r-annotationdbi)
("r-org-hs-eg-db" ,r-org-hs-eg-db)
("r-txdb-hsapiens-ucsc-hg19-knowngene" ,r-txdb-hsapiens-ucsc-hg19-knowngene)))
(home-page "https://bioconductor.org/packages/FDb.InfiniumMethylation.hg19/")
(synopsis "Compiled HumanMethylation27 and HumanMethylation450 annotations")
(description
"This is an annotation package for Illumina Infinium DNA methylation
probes. It contains the compiled HumanMethylation27 and HumanMethylation450
annotations.")
(license license:artistic2.0)))
;;; Experiment data ;;; Experiment data