gnu: Add r-fdb-infiniummethylation-hg19.
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
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@ -650,6 +650,38 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
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based on the knownGene track.")
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based on the knownGene track.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-fdb-infiniummethylation-hg19
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(package
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(name "r-fdb-infiniummethylation-hg19")
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(version "2.2.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"FDb.InfiniumMethylation.hg19_"
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version ".tar.gz"))
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(sha256
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(base32
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"0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"))))
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(properties
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`((upstream-name . "FDb.InfiniumMethylation.hg19")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biostrings" ,r-biostrings)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-annotationdbi" ,r-annotationdbi)
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("r-org-hs-eg-db" ,r-org-hs-eg-db)
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("r-txdb-hsapiens-ucsc-hg19-knowngene" ,r-txdb-hsapiens-ucsc-hg19-knowngene)))
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(home-page "https://bioconductor.org/packages/FDb.InfiniumMethylation.hg19/")
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(synopsis "Compiled HumanMethylation27 and HumanMethylation450 annotations")
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(description
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"This is an annotation package for Illumina Infinium DNA methylation
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probes. It contains the compiled HumanMethylation27 and HumanMethylation450
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annotations.")
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(license license:artistic2.0)))
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;;; Experiment data
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;;; Experiment data
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