gnu: Add r-minfi.
* gnu/packages/bioconductor.scm (r-minfi): New variable.
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@ -2234,3 +2234,52 @@ Bayes Analyses of Microarrays} (EBAM).")
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to identify differentially methylated regions in epigenetic epidemiology
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studies.")
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(license license:artistic2.0)))
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(define-public r-minfi
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(package
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(name "r-minfi")
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(version "1.28.4")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "minfi" version))
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(sha256
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(base32
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"1sjwwqb0syngvj75saaky9y06hbxsawhhcmfvavzkhicxipafv7r"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-beanplot" ,r-beanplot)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-biostrings" ,r-biostrings)
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("r-bumphunter" ,r-bumphunter)
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("r-data-table" ,r-data-table)
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("r-delayedarray" ,r-delayedarray)
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("r-delayedmatrixstats" ,r-delayedmatrixstats)
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("r-genefilter" ,r-genefilter)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-geoquery" ,r-geoquery)
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("r-hdf5array" ,r-hdf5array)
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("r-illuminaio" ,r-illuminaio)
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("r-iranges" ,r-iranges)
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("r-lattice" ,r-lattice)
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("r-limma" ,r-limma)
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("r-mass" ,r-mass)
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("r-mclust" ,r-mclust)
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("r-nlme" ,r-nlme)
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("r-nor1mix" ,r-nor1mix)
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("r-preprocesscore" ,r-preprocesscore)
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("r-quadprog" ,r-quadprog)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-reshape" ,r-reshape)
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("r-s4vectors" ,r-s4vectors)
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("r-siggenes" ,r-siggenes)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(home-page "https://github.com/hansenlab/minfi")
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(synopsis "Analyze Illumina Infinium DNA methylation arrays")
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(description
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"This package provides tools to analyze and visualize Illumina Infinium
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methylation arrays.")
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(license license:artistic2.0)))
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