gnu: Add r-minfi.

* gnu/packages/bioconductor.scm (r-minfi): New variable.
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Ricardo Wurmus 2019-03-13 13:17:11 +01:00
parent 34a24f95ec
commit 0fbaf1956b
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@ -2234,3 +2234,52 @@ Bayes Analyses of Microarrays} (EBAM).")
to identify differentially methylated regions in epigenetic epidemiology to identify differentially methylated regions in epigenetic epidemiology
studies.") studies.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-minfi
(package
(name "r-minfi")
(version "1.28.4")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "minfi" version))
(sha256
(base32
"1sjwwqb0syngvj75saaky9y06hbxsawhhcmfvavzkhicxipafv7r"))))
(build-system r-build-system)
(propagated-inputs
`(("r-beanplot" ,r-beanplot)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biostrings" ,r-biostrings)
("r-bumphunter" ,r-bumphunter)
("r-data-table" ,r-data-table)
("r-delayedarray" ,r-delayedarray)
("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-genefilter" ,r-genefilter)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-geoquery" ,r-geoquery)
("r-hdf5array" ,r-hdf5array)
("r-illuminaio" ,r-illuminaio)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
("r-limma" ,r-limma)
("r-mass" ,r-mass)
("r-mclust" ,r-mclust)
("r-nlme" ,r-nlme)
("r-nor1mix" ,r-nor1mix)
("r-preprocesscore" ,r-preprocesscore)
("r-quadprog" ,r-quadprog)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-reshape" ,r-reshape)
("r-s4vectors" ,r-s4vectors)
("r-siggenes" ,r-siggenes)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "https://github.com/hansenlab/minfi")
(synopsis "Analyze Illumina Infinium DNA methylation arrays")
(description
"This package provides tools to analyze and visualize Illumina Infinium
methylation arrays.")
(license license:artistic2.0)))