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gnu: jellyfish: Update to 2.2.7. 

* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
This commit is contained in:
Ricardo Wurmus 2017-11-27 16:21:54 +01:00 committed by Ricardo Wurmus
parent f1b90a2b58
commit 117d8cc40e
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1 changed files with 6 additions and 3 deletions
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@ -3292,7 +3292,7 @@ experiments and provide highly stable thresholds based on reproducibility.")
(define-public jellyfish (define-public jellyfish
(package (package
(name "jellyfish") (name "jellyfish")
(version "2.2.4") (version "2.2.7")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/gmarcais/Jellyfish/" (uri (string-append "https://github.com/gmarcais/Jellyfish/"
@ -3300,7 +3300,7 @@ experiments and provide highly stable thresholds based on reproducibility.")
"/jellyfish-" version ".tar.gz")) "/jellyfish-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"0a6xnynqy2ibfbfz86b9g2m2dgm7f1469pmymkpam333gi3p26nk")))) "1a1iwq9pq54k2m9ypvwl5s0bqfl64gwh9dx5af9i382ajas2016q"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(outputs '("out" ;for library (outputs '("out" ;for library
"ruby" ;for Ruby bindings "ruby" ;for Ruby bindings
@ -3323,7 +3323,10 @@ experiments and provide highly stable thresholds based on reproducibility.")
`(("bc" ,bc) `(("bc" ,bc)
("time" ,time) ("time" ,time)
("ruby" ,ruby) ("ruby" ,ruby)
("python" ,python-2))) ("python" ,python-2)
("pkg-config" ,pkg-config)))
(inputs
`(("htslib" ,htslib)))
(synopsis "Tool for fast counting of k-mers in DNA") (synopsis "Tool for fast counting of k-mers in DNA")
(description (description
"Jellyfish is a tool for fast, memory-efficient counting of k-mers in "Jellyfish is a tool for fast, memory-efficient counting of k-mers in