gnu: Add r-msnbase.

* gnu/packages/bioinformatics.scm (r-msnbase): New variable.
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Ricardo Wurmus 2017-01-16 12:21:21 +01:00
parent 6a67e181ac
commit 11879284cb
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@ -8422,3 +8422,44 @@ accurate missing value estimation. A set of methods for printing and plotting
the results is also provided. All PCA methods make use of the same data the results is also provided. All PCA methods make use of the same data
structure (pcaRes) to provide a common interface to the PCA results.") structure (pcaRes) to provide a common interface to the PCA results.")
(license license:gpl3+))) (license license:gpl3+)))
(define-public r-msnbase
(package
(name "r-msnbase")
(version "2.0.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MSnbase" version))
(sha256
(base32
"0jjjs29dcwsjaxzfqxy98ycpg3rwxzzchkj77my3cjgdc00sm66n"))))
(properties `((upstream-name . "MSnbase")))
(build-system r-build-system)
(propagated-inputs
`(("r-affy" ,r-affy)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-digest" ,r-digest)
("r-ggplot2" ,r-ggplot2)
("r-impute" ,r-impute)
("r-iranges" ,r-iranges)
("r-maldiquant" ,r-maldiquant)
("r-mzid" ,r-mzid)
("r-mzr" ,r-mzr)
("r-pcamethods" ,r-pcamethods)
("r-plyr" ,r-plyr)
("r-preprocesscore" ,r-preprocesscore)
("r-protgenerics" ,r-protgenerics)
("r-rcpp" ,r-rcpp)
("r-reshape2" ,r-reshape2)
("r-s4vectors" ,r-s4vectors)
("r-vsn" ,r-vsn)
("r-xml" ,r-xml)))
(home-page "https://github.com/lgatto/MSnbase")
(synopsis "Base functions and classes for MS-based proteomics")
(description
"This package provides basic plotting, data manipulation and processing
of MS-based proteomics data.")
(license license:artistic2.0)))