gnu: Add r-msnbase.
* gnu/packages/bioinformatics.scm (r-msnbase): New variable.
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@ -8422,3 +8422,44 @@ accurate missing value estimation. A set of methods for printing and plotting
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the results is also provided. All PCA methods make use of the same data
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the results is also provided. All PCA methods make use of the same data
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structure (pcaRes) to provide a common interface to the PCA results.")
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structure (pcaRes) to provide a common interface to the PCA results.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public r-msnbase
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(package
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(name "r-msnbase")
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(version "2.0.2")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "MSnbase" version))
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(sha256
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(base32
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"0jjjs29dcwsjaxzfqxy98ycpg3rwxzzchkj77my3cjgdc00sm66n"))))
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(properties `((upstream-name . "MSnbase")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-affy" ,r-affy)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-digest" ,r-digest)
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("r-ggplot2" ,r-ggplot2)
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("r-impute" ,r-impute)
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("r-iranges" ,r-iranges)
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("r-maldiquant" ,r-maldiquant)
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("r-mzid" ,r-mzid)
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("r-mzr" ,r-mzr)
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("r-pcamethods" ,r-pcamethods)
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("r-plyr" ,r-plyr)
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("r-preprocesscore" ,r-preprocesscore)
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("r-protgenerics" ,r-protgenerics)
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("r-rcpp" ,r-rcpp)
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("r-reshape2" ,r-reshape2)
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("r-s4vectors" ,r-s4vectors)
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("r-vsn" ,r-vsn)
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("r-xml" ,r-xml)))
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(home-page "https://github.com/lgatto/MSnbase")
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(synopsis "Base functions and classes for MS-based proteomics")
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(description
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"This package provides basic plotting, data manipulation and processing
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of MS-based proteomics data.")
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(license license:artistic2.0)))
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