gnu: Add r-affycoretools.

* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
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Ricardo Wurmus 2019-09-15 20:57:32 +02:00
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@ -1077,6 +1077,45 @@ This package provides some simple approaches to in silico creation of quality
problems in CEL-level data to help evaluate performance of quality metrics.") problems in CEL-level data to help evaluate performance of quality metrics.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-affycoretools
(package
(name "r-affycoretools")
(version "1.56.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "affycoretools" version))
(sha256
(base32
"17dxpzhwwdwnxkdpmyjwdnacg41hw60mlc71w4nzlvs28sfsy09s"))))
(properties `((upstream-name . "affycoretools")))
(build-system r-build-system)
(propagated-inputs
`(("r-affy" ,r-affy)
("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-dbi" ,r-dbi)
("r-edger" ,r-edger)
("r-gcrma" ,r-gcrma)
("r-ggplot2" ,r-ggplot2)
("r-gostats" ,r-gostats)
("r-gplots" ,r-gplots)
("r-hwriter" ,r-hwriter)
("r-lattice" ,r-lattice)
("r-limma" ,r-limma)
("r-oligoclasses" ,r-oligoclasses)
("r-reportingtools" ,r-reportingtools)
("r-rsqlite" ,r-rsqlite)
("r-s4vectors" ,r-s4vectors)
("r-xtable" ,r-xtable)))
(home-page "https://bioconductor.org/packages/affycoretools/")
(synopsis "Functions for analyses with Affymetrix GeneChips")
(description
"This package provides various wrapper functions that have been written
to streamline the more common analyses that a Biostatistician might see.")
(license license:artistic2.0)))
(define-public r-annotate (define-public r-annotate
(package (package
(name "r-annotate") (name "r-annotate")