gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3): ...to here.
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@ -129,6 +129,38 @@ melanogaster (Fly) as provided by UCSC (dm6) and stored in Biostrings
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objects.")
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objects.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-bsgenome-dmelanogaster-ucsc-dm3
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(package
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(name "r-bsgenome-dmelanogaster-ucsc-dm3")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"BSgenome.Dmelanogaster.UCSC.dm3_"
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version ".tar.gz"))
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(sha256
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(base32
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"19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
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(properties
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`((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)))
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(home-page
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"https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/")
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(synopsis "Full genome sequences for Fly")
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(description
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"This package provides full genome sequences for Drosophila
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melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
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Biostrings objects.")
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(license license:artistic2.0)))
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(define-public r-bsgenome-dmelanogaster-ucsc-dm3-masked
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(define-public r-bsgenome-dmelanogaster-ucsc-dm3-masked
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(package
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(package
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(name "r-bsgenome-dmelanogaster-ucsc-dm3-masked")
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(name "r-bsgenome-dmelanogaster-ucsc-dm3-masked")
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@ -8140,38 +8140,6 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
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based on the knownGene track.")
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based on the knownGene track.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-bsgenome-dmelanogaster-ucsc-dm3
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(package
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(name "r-bsgenome-dmelanogaster-ucsc-dm3")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"BSgenome.Dmelanogaster.UCSC.dm3_"
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version ".tar.gz"))
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(sha256
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(base32
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"19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
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(properties
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`((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)))
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(home-page
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"https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/")
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(synopsis "Full genome sequences for Fly")
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(description
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"This package provides full genome sequences for Drosophila
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melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
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Biostrings objects.")
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(license license:artistic2.0)))
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(define-public r-motifrg
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(define-public r-motifrg
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(package
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(package
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(name "r-motifrg")
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(name "r-motifrg")
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