gnu: Add bpp-popgen.

* gnu/packages/bioinformatics.scm (bpp-popgen): New variable.
This commit is contained in:
Ben Woodcroft 2016-07-12 16:02:45 +10:00
parent 8b5f4d5700
commit 159a701678
No known key found for this signature in database
GPG Key ID: E44DCCD146E0CCF4
1 changed files with 33 additions and 0 deletions

View File

@ -592,6 +592,39 @@ analysis, phylogenetics, molecular evolution and population genetics. This
library provides phylogenetics-related modules.")
(license license:cecill-c))))
(define-public bpp-popgen
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.
;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
(let ((commit "e472bac9b1a148803895d747cd6d0c5904f85d9f"))
(package
(name "bpp-popgen")
(version (string-append "2.2.0-1." (string-take commit 7)))
(source (origin
(method git-fetch)
(uri (git-reference
(url "http://biopp.univ-montp2.fr/git/bpp-popgen")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"0yn82dzn1n5629nzja68xfrhi655709rjanyryb36vzkmymy6dw5"))))
(build-system cmake-build-system)
(arguments
`(#:parallel-build? #f
#:tests? #f)) ; There are no tests.
(inputs
`(("bpp-core" ,bpp-core)
("bpp-seq" ,bpp-seq)
("gcc" ,gcc-5)))
(home-page "http://biopp.univ-montp2.fr")
(synopsis "Bio++ population genetics library")
(description
"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics. This
library provides population genetics-related modules.")
(license license:cecill-c))))
(define-public bpp-seq
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.