gnu: Add Ribotaper.

* gnu/packages/bioinformatics.scm (ribotaper): New variable.
master
Ricardo Wurmus 2016-07-12 12:19:39 +02:00
parent 9a8f309cf1
commit 17dc32a400
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1 changed files with 30 additions and 0 deletions

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@ -273,6 +273,36 @@ BED, GFF/GTF, VCF.")
(base32
"05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf"))))))
(define-public ribotaper
(package
(name "ribotaper")
(version "1.3.1")
(source (origin
(method url-fetch)
(uri (string-append "https://ohlerlab.mdc-berlin.de/"
"files/RiboTaper/RiboTaper_Version_"
version ".tar.gz"))
(sha256
(base32
"0ykjbps1y3z3085q94npw8i9x5gldc6shy8vlc08v76zljsm07hv"))))
(build-system gnu-build-system)
(inputs
`(("bedtools" ,bedtools-2.18)
("samtools" ,samtools-0.1)
("r" ,r)
("r-foreach" ,r-foreach)
("r-xnomial" ,r-xnomial)
("r-domc" ,r-domc)
("r-multitaper" ,r-multitaper)
("r-seqinr" ,r-seqinr)))
(home-page "https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/")
(synopsis "Define translated ORFs using ribosome profiling data")
(description
"Ribotaper is a method for defining translated @dfn{open reading
frames} (ORFs) using ribosome profiling (ribo-seq) data. This package
provides the Ribotaper pipeline.")
(license license:gpl3+)))
(define-public bioawk
(package
(name "bioawk")