gnu: Add r-bsgenome-dmelanogaster-ucsc-dm6.

* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6): New variable.
master
Ricardo Wurmus 2018-05-15 12:55:27 +02:00
parent f858e58f19
commit 183db725a4
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@ -29,6 +29,38 @@
#:use-module (gnu packages statistics)
#:use-module (gnu packages bioinformatics))
(define-public r-bsgenome-dmelanogaster-ucsc-dm6
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm6")
(version "1.4.1")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Dmelanogaster.UCSC.dm6_"
version ".tar.gz"))
(sha256
(base32
"1bhj0rdgf7lspw4xby9y9mf7v7jxxz8001bc8vw8kf04rjsx6060"))))
(properties
`((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm6")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm6/")
(synopsis "Full genome sequences for Fly")
(description
"This package provides full genome sequences for Drosophila
melanogaster (Fly) as provided by UCSC (dm6) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-hpar
(package
(name "r-hpar")