gnu: Add r-birta.

* gnu/packages/bioconductor.scm (r-birta): New variable.
master
Ricardo Wurmus 2019-05-31 14:40:29 +02:00
parent 81e3de01ae
commit 1a24f855c8
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 29 additions and 0 deletions

View File

@ -4577,3 +4577,32 @@ respect to the original network. It includes functions for the analysis of
the introduced randomness across the switching steps and several other
routines to analyse the resulting networks and their natural projections.")
(license license:gpl3)))
(define-public r-birta
(package
(name "r-birta")
(version "1.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "birta" version))
(sha256
(base32
"12xjyvgmh4h0b7hi4qg50kcpb9003gnh2xyfgncb8l9mzvsbkxc2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-limma" ,r-limma)
("r-mass" ,r-mass)))
(home-page "https://bioconductor.org/packages/birta")
(synopsis "Bayesian inference of regulation of transcriptional activity")
(description
"Expression levels of mRNA molecules are regulated by different
processes, comprising inhibition or activation by transcription factors and
post-transcriptional degradation by microRNAs. @dfn{birta} (Bayesian
Inference of Regulation of Transcriptional Activity) uses the regulatory
networks of transcription factors and miRNAs together with mRNA and miRNA
expression data to predict switches in regulatory activity between two
conditions. A Bayesian network is used to model the regulatory structure and
Markov-Chain-Monte-Carlo is applied to sample the activity states.")
(license license:gpl2+)))