gnu: Add libBigWig.

* gnu/packages/bioinformatics.scm (libbigwig): New variable.
This commit is contained in:
Ricardo Wurmus 2016-02-24 17:17:53 +01:00
parent 1644f0cd87
commit 1baee943ca
1 changed files with 47 additions and 0 deletions

View File

@ -40,6 +40,7 @@
#:use-module (gnu packages boost)
#:use-module (gnu packages compression)
#:use-module (gnu packages cpio)
#:use-module (gnu packages curl)
#:use-module (gnu packages file)
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
@ -1081,6 +1082,52 @@ preparation protocols.")
other types of unwanted sequence from high-throughput sequencing reads.")
(license license:expat)))
(define-public libbigwig
(package
(name "libbigwig")
(version "0.1.4")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/dpryan79/libBigWig/"
"archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"098rjh35pi4a9q83n8wiwvyzykjqj6l8q189p1xgfw4ghywdlvw1"))))
(build-system gnu-build-system)
(arguments
`(#:test-target "test"
#:make-flags
(list "CC=gcc"
(string-append "prefix=" (assoc-ref %outputs "out")))
#:phases
(modify-phases %standard-phases
(delete 'configure)
(add-before 'check 'disable-curl-test
(lambda _
(substitute* "Makefile"
(("./test/testRemote.*") ""))
#t))
;; This has been fixed with the upstream commit 4ff6959cd8a0, but
;; there has not yet been a release containing this change.
(add-before 'install 'create-target-dirs
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(mkdir-p (string-append out "/lib"))
(mkdir-p (string-append out "/include"))
#t))))))
(inputs
`(("zlib" ,zlib)
("curl" ,curl)))
(native-inputs
`(("doxygen" ,doxygen)))
(home-page "https://github.com/dpryan79/libBigWig")
(synopsis "C library for handling bigWig files")
(description
"This package provides a C library for parsing local and remote BigWig
files.")
(license license:expat)))
(define-public deeptools
(package
(name "deeptools")