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gnu: r-vegan: Update to 2.4-3. 

* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-3.
[arguments]: Remove build phase "revert-test-deletion".
[native-inputs]: Remove "r-vegan-delete-tests-patch".
This commit is contained in:
Ricardo Wurmus 2017-04-08 10:24:04 +02:00
parent 1c8ee3fcc2
commit 1d65b5379b
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GPG Key ID: 197A5888235FACAC
1 changed files with 3 additions and 25 deletions
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gnu/packages/bioinformatics.scm
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@ -5356,40 +5356,18 @@ information as possible.")
(define-public r-vegan
(package
(name "r-vegan")
(version "2.4-2")
(version "2.4-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "vegan" version))
(sha256
(base32
"12wf64izrpq9z3ix7mgm5421mq0xsm8dw5qblvcrz452nfhjf5w9"))))
"15zcxfix2d854897k1lr0sfmj2n00339nlsppcr3zrb238lb2mi5"))))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'revert-test-deletion
;; The distributed sources do not include tests with the CRAN
;; package. Here we revert the commit
;; `591d0e8ba1deaaf82445474ec6619c0b43db4e63' which deletes these
;; tests. There are plans to not delete tests in future as
;; documented at https://github.com/vegandevs/vegan/issues/181.
(lambda* (#:key inputs #:allow-other-keys)
(zero?
(system* "patch" "-R" "-p1" "-i"
(assoc-ref inputs "r-vegan-delete-tests-patch"))))))))
(native-inputs
`(("gfortran" ,gfortran)
("r-knitr" ,r-knitr)
("r-vegan-delete-tests-patch"
,(origin
(method url-fetch)
(uri (string-append
"https://github.com/vegandevs/vegan/commit/"
"591d0e8ba1deaaf82445474ec6619c0b43db4e63.patch"))
(sha256
(base32
"0b1bi7y4jjdl3ph721vm9apm51dr2z9piwvhy4355sf2b4kyyj5a"))))))
("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-cluster" ,r-cluster)
("r-lattice" ,r-lattice)