gnu: Add python-hic2cool.

* gnu/packages/bioinformatics.scm (python-hic2cool): New variable.
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Ricardo Wurmus 2018-09-14 09:15:16 +02:00
parent 6ffffb3c96
commit 1dd153b3aa
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@ -13699,3 +13699,27 @@ are highly customizable. Currently, it is possible to plot: bigwig, bed (many
options), bedgraph, links (represented as arcs), and Hi-C matrices.
pyGenomeTracks can make plots with or without Hi-C data.")
(license license:gpl3+)))
(define-public python-hic2cool
(package
(name "python-hic2cool")
(version "0.4.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "hic2cool" version))
(sha256
(base32
"0xy6mhfns2lzib1kcr6419jjp6pmh0qx8z8na55lmiwn0ds8q9cl"))))
(build-system python-build-system)
(arguments '(#:tests? #f)) ; no tests included
(propagated-inputs
`(("python-cooler" ,python-cooler)))
(home-page "https://github.com/4dn-dcic/hic2cool")
(synopsis "Converter for .hic and .cool files")
(description
"This package provides a converter between @code{.hic} files (from
juicer) and single-resolution or multi-resolution @code{.cool} files (for
cooler). Both @code{hic} and @code{cool} files describe Hi-C contact
matrices.")
(license license:expat)))