gnu: Add python-hic2cool.
* gnu/packages/bioinformatics.scm (python-hic2cool): New variable.
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@ -13699,3 +13699,27 @@ are highly customizable. Currently, it is possible to plot: bigwig, bed (many
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options), bedgraph, links (represented as arcs), and Hi-C matrices.
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pyGenomeTracks can make plots with or without Hi-C data.")
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(license license:gpl3+)))
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(define-public python-hic2cool
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(package
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(name "python-hic2cool")
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(version "0.4.2")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "hic2cool" version))
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(sha256
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(base32
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"0xy6mhfns2lzib1kcr6419jjp6pmh0qx8z8na55lmiwn0ds8q9cl"))))
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(build-system python-build-system)
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(arguments '(#:tests? #f)) ; no tests included
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(propagated-inputs
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`(("python-cooler" ,python-cooler)))
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(home-page "https://github.com/4dn-dcic/hic2cool")
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(synopsis "Converter for .hic and .cool files")
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(description
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"This package provides a converter between @code{.hic} files (from
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juicer) and single-resolution or multi-resolution @code{.cool} files (for
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cooler). Both @code{hic} and @code{cool} files describe Hi-C contact
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matrices.")
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(license license:expat)))
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