gnu: Add r-absim.

* gnu/packages/cran.scm (r-absim): New variable.
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pimi 2018-10-02 16:16:45 -04:00 committed by Leo Famulari
parent 3f0f49d708
commit 1ddb2b5c1c
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@ -6131,3 +6131,31 @@ that are part of an activity bout, and find the maximum 10-minute average count
value. The functions are generally very flexible, allowing for a variety of
algorithms to be implemented.")
(license license:gpl3)))
(define-public r-absim
(package
(name "r-absim")
(version "0.2.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "AbSim" version))
(sha256
(base32 "16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m"))))
(properties `((upstream-name . "AbSim")))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
("r-powerlaw" ,r-powerlaw)))
(home-page "https://cran.r-project.org/web/packages/AbSim/")
(synopsis "Time resolved simulations of antibody repertoires")
(description
"This package provides simulation methods for the evolution of antibody repertoires.
The heavy and light chain variable region of both human and C57BL/6 mice can
be simulated in a time-dependent fashion. Both single lineages using one set of
V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins
with an initial V-D-J recombination event, starting the first phylogenetic tree.
Upon completion, the main loop of the algorithm begins, with each iteration
representing one simulated time step. Various mutation events are possible at
each time step, contributing to a diverse final repertoire.")
(license license:gpl2)))