gnu: Add OrfM.

* gnu/packages/bioinformatics.scm (orfm): New variable.

Signed-off-by: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
master
Ben Woodcroft 2015-06-09 16:10:51 +02:00 committed by Ricardo Wurmus
parent 47da6268c4
commit 1e44cf8b0f
1 changed files with 21 additions and 0 deletions

View File

@ -1101,6 +1101,27 @@ RNA-Seq, the MISO model uses Bayesian inference to compute the probability
that a read originated from a particular isoform.")
(license license:gpl2)))
(define-public orfm
(package
(name "orfm")
(version "0.3.2")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/wwood/OrfM/releases/download/v"
version "/orfm-" version ".tar.gz"))
(sha256
(base32
"00jqvlspj9662ni9r4n1snxfnwkzc02i46g5nk1kwjshi6v3vgg3"))))
(build-system gnu-build-system)
(inputs `(("zlib" ,zlib)))
(synopsis "Simple and not slow open reading frame (ORF) caller")
(description
"An ORF caller finds stretches of DNA that when translated are not
interrupted by stop codons. OrfM finds and prints these ORFs.")
(home-page "https://github.com/wwood/OrfM")
(license license:lgpl3+)))
(define-public python2-pbcore
(package
(name "python2-pbcore")