gnu: Add python-pypairix.
* gnu/packages/bioinformatics.scm (python-pypairix): New variable.
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@ -13532,3 +13532,27 @@ range envelopment. This library was designed to allow tagging text and time
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intervals, where the intervals include the lower bound but not the upper
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bound.")
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(license license:asl2.0)))
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(define-public python-pypairix
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(package
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(name "python-pypairix")
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(version "0.3.6")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pypairix" version))
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(sha256
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(base32
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"0zs92b74s5v4xy2h16s15f3z6l4nnbw8x8zyif7xx5xpafjn0xss"))))
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(build-system python-build-system)
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;; FIXME: the tests fail because test.support cannot be loaded:
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;; ImportError: cannot import name 'support'
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(arguments '(#:tests? #f))
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(inputs
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`(("zlib" ,zlib)))
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(home-page "https://github.com/4dn-dcic/pairix")
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(synopsis "Support for querying pairix-indexed bgzipped text files")
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(description
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"Pypairix is a Python module for fast querying on a pairix-indexed
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bgzipped text file that contains a pair of genomic coordinates per line.")
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(license license:expat)))
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