gnu: Add python-pypairix.

* gnu/packages/bioinformatics.scm (python-pypairix): New variable.
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Ricardo Wurmus 2018-09-05 16:00:02 +02:00 committed by Ricardo Wurmus
parent a9d496b353
commit 1f41f01c14
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@ -13532,3 +13532,27 @@ range envelopment. This library was designed to allow tagging text and time
intervals, where the intervals include the lower bound but not the upper
bound.")
(license license:asl2.0)))
(define-public python-pypairix
(package
(name "python-pypairix")
(version "0.3.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pypairix" version))
(sha256
(base32
"0zs92b74s5v4xy2h16s15f3z6l4nnbw8x8zyif7xx5xpafjn0xss"))))
(build-system python-build-system)
;; FIXME: the tests fail because test.support cannot be loaded:
;; ImportError: cannot import name 'support'
(arguments '(#:tests? #f))
(inputs
`(("zlib" ,zlib)))
(home-page "https://github.com/4dn-dcic/pairix")
(synopsis "Support for querying pairix-indexed bgzipped text files")
(description
"Pypairix is a Python module for fast querying on a pairix-indexed
bgzipped text file that contains a pair of genomic coordinates per line.")
(license license:expat)))