gnu: Add python-pypairix.

* gnu/packages/bioinformatics.scm (python-pypairix): New variable.
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Ricardo Wurmus 2018-09-05 16:00:02 +02:00 committed by Ricardo Wurmus
parent a9d496b353
commit 1f41f01c14
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@ -13532,3 +13532,27 @@ range envelopment. This library was designed to allow tagging text and time
intervals, where the intervals include the lower bound but not the upper intervals, where the intervals include the lower bound but not the upper
bound.") bound.")
(license license:asl2.0))) (license license:asl2.0)))
(define-public python-pypairix
(package
(name "python-pypairix")
(version "0.3.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pypairix" version))
(sha256
(base32
"0zs92b74s5v4xy2h16s15f3z6l4nnbw8x8zyif7xx5xpafjn0xss"))))
(build-system python-build-system)
;; FIXME: the tests fail because test.support cannot be loaded:
;; ImportError: cannot import name 'support'
(arguments '(#:tests? #f))
(inputs
`(("zlib" ,zlib)))
(home-page "https://github.com/4dn-dcic/pairix")
(synopsis "Support for querying pairix-indexed bgzipped text files")
(description
"Pypairix is a Python module for fast querying on a pairix-indexed
bgzipped text file that contains a pair of genomic coordinates per line.")
(license license:expat)))