gnu: java-picard: Delete failing build phase.

* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete "generate-jar-indices" phase.
2018-06-05 11:26:08 +02:00 · 2018-06-05 11:26:08 +02:00 · 1f94ba9408
parent 1ed386fc26
commit 1f94ba9408
1 changed files with 2 additions and 0 deletions
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@ -3154,6 +3154,8 @@ manipulating HTS data.")
       #:jdk ,icedtea-8
       #:phases
       (modify-phases %standard-phases
+         ;; FIXME: this phase fails with "duplicate entry: htsjdk/samtools/AbstractBAMFileIndex$1.class"
+         (delete 'generate-jar-indices)
         (add-after 'unpack 'use-our-htsjdk
           (lambda* (#:key inputs #:allow-other-keys)
             (substitute* "build.xml"