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gnu: java-picard: Delete failing build phase. 

* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Delete
"generate-jar-indices" phase.
This commit is contained in:
Ricardo Wurmus 2018-06-05 11:26:08 +02:00
parent 1ed386fc26
commit 1f94ba9408
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@ -3154,6 +3154,8 @@ manipulating HTS data.")
#:jdk ,icedtea-8 #:jdk ,icedtea-8
#:phases #:phases
(modify-phases %standard-phases (modify-phases %standard-phases
;; FIXME: this phase fails with "duplicate entry: htsjdk/samtools/AbstractBAMFileIndex$1.class"
(delete 'generate-jar-indices)
(add-after 'unpack 'use-our-htsjdk (add-after 'unpack 'use-our-htsjdk
(lambda* (#:key inputs #:allow-other-keys) (lambda* (#:key inputs #:allow-other-keys)
(substitute* "build.xml" (substitute* "build.xml"