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gnu: cutadapt: Update to 1.12. 

* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.12.
[inputs]: Add python-xopen.
This commit is contained in:
Tobias Geerinckx-Rice 2016-12-15 11:16:46 +01:00
parent 361a2fcf8d
commit 1f94bff2d4
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GPG Key ID: 91CCDB9B48541B99
1 changed files with 4 additions and 2 deletions
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@ -1804,7 +1804,7 @@ preparation protocols.")
(define-public cutadapt (define-public cutadapt
(package (package
(name "cutadapt") (name "cutadapt")
(version "1.8") (version "1.12")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (string-append
@ -1813,7 +1813,7 @@ preparation protocols.")
(file-name (string-append name "-" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"161bp87y6gd6r5bmvjpn2b1k942i3fizfpa139f0jn6jv1wcp5h5")))) "19smhh6444ikn4jlmyhvffw4m5aw7yg07rqsk7arg8dkwyga1i4v"))))
(build-system python-build-system) (build-system python-build-system)
(arguments (arguments
;; tests must be run after install ;; tests must be run after install
@ -1830,6 +1830,8 @@ preparation protocols.")
"/site-packages")) "/site-packages"))
(zero? (system* "nosetests" "-P" "tests"))) (zero? (system* "nosetests" "-P" "tests")))
(alist-delete 'check %standard-phases)))) (alist-delete 'check %standard-phases))))
(inputs
`(("python-xopen" ,python-xopen)))
(native-inputs (native-inputs
`(("python-cython" ,python-cython) `(("python-cython" ,python-cython)
("python-nose" ,python-nose))) ("python-nose" ,python-nose)))