gnu: Add libdivsufsort.
* gnu/packages/bioinformatics.scm (libdivsufsort): New variable.
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@ -11132,3 +11132,31 @@ code that is used in the Cufflinks codebase. The goal of this library is to
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provide this functionality without the necessity of drawing in a heavy-weight
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provide this functionality without the necessity of drawing in a heavy-weight
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dependency like SeqAn.")
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dependency like SeqAn.")
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(license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt"))))
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(license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt"))))
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(define-public libdivsufsort
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(package
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(name "libdivsufsort")
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(version "2.0.1")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/y-256/libdivsufsort.git")
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(commit version)))
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(sha256
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(base32
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"0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
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(build-system cmake-build-system)
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(arguments
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'(#:tests? #f ; there are no tests
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#:configure-flags
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;; Needed for rapmap and sailfish.
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'("-DBUILD_DIVSUFSORT64=ON")))
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(home-page "https://github.com/y-256/libdivsufsort")
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(synopsis "Lightweight suffix-sorting library")
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(description "libdivsufsort is a software library that implements a
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lightweight suffix array construction algorithm. This library provides a
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simple and an efficient C API to construct a suffix array and a
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Burrows-Wheeler transformed string from a given string over a constant-size
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alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
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bytes of memory space, where n is the length of the string.")
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(license license:expat)))
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