gnu: Add libdivsufsort.

* gnu/packages/bioinformatics.scm (libdivsufsort): New variable.
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Ricardo Wurmus 2018-01-17 22:42:04 +01:00
parent c3b2ab9d3b
commit 1fe0bde34d
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@ -11132,3 +11132,31 @@ code that is used in the Cufflinks codebase. The goal of this library is to
provide this functionality without the necessity of drawing in a heavy-weight
dependency like SeqAn.")
(license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt"))))
(define-public libdivsufsort
(package
(name "libdivsufsort")
(version "2.0.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/y-256/libdivsufsort.git")
(commit version)))
(sha256
(base32
"0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
(build-system cmake-build-system)
(arguments
'(#:tests? #f ; there are no tests
#:configure-flags
;; Needed for rapmap and sailfish.
'("-DBUILD_DIVSUFSORT64=ON")))
(home-page "https://github.com/y-256/libdivsufsort")
(synopsis "Lightweight suffix-sorting library")
(description "libdivsufsort is a software library that implements a
lightweight suffix array construction algorithm. This library provides a
simple and an efficient C API to construct a suffix array and a
Burrows-Wheeler transformed string from a given string over a constant-size
alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
bytes of memory space, where n is the length of the string.")
(license license:expat)))