From 207ce8fbe5a906789aafa4d337675c627ce592d8 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Wed, 19 Oct 2016 15:09:55 +0200 Subject: [PATCH] gnu: Add r-biocviews. * gnu/packages/bioinformatics.scm (r-biocviews): New variable. --- gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 00770e8fbb..d58227408c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5888,6 +5888,34 @@ packages.") Bioconductor, CRAN, and Github.") (license license:artistic2.0))) +(define-public r-biocviews + (package + (name "r-biocviews") + (version "1.42.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "biocViews" version)) + (sha256 + (base32 + "07rjk10b91pkriyq297w86199r2d3sfji3ggs9mq2gyalsa8y4b6")))) + (properties + `((upstream-name . "biocViews"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-graph" ,r-graph) + ("r-rbgl" ,r-rbgl) + ("r-rcurl" ,r-rcurl) + ("r-xml" ,r-xml) + ("r-knitr" ,r-knitr) + ("r-runit" ,r-runit))) + (home-page "http://bioconductor.org/packages/biocViews") + (synopsis "Bioconductor package categorization helper") + (description "The purpose of biocViews is to create HTML pages that +categorize packages in a Bioconductor package repository according to keywords, +also known as views, in a controlled vocabulary.") + (license license:artistic2.0))) + (define-public r-getopt (package (name "r-getopt")