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gnu: sra-tools: Fix build on i686. 

* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass
"VDB_LIBDIR" in make-flags; dynamically link libmagic.
This commit is contained in:
Ricardo Wurmus 2016-09-28 22:28:51 +02:00
parent 37042a0fb4
commit 2320e76b82
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1 changed files with 12 additions and 0 deletions
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@ -4580,6 +4580,14 @@ sequence itself can be retrieved from these databases.")
(arguments (arguments
`(#:parallel-build? #f ; not supported `(#:parallel-build? #f ; not supported
#:tests? #f ; no "check" target #:tests? #f ; no "check" target
#:make-flags
(list (string-append "VDB_LIBDIR="
(assoc-ref %build-inputs "ncbi-vdb")
,(if (string-prefix? "x86_64"
(or (%current-target-system)
(%current-system)))
"/lib64"
"/lib32")))
#:phases #:phases
(alist-replace (alist-replace
'configure 'configure
@ -4598,6 +4606,10 @@ sequence itself can be retrieved from these databases.")
(("my \\$ilibdir = File::Spec->catdir\\(\\$builddir, 'ilib'\\);") (("my \\$ilibdir = File::Spec->catdir\\(\\$builddir, 'ilib'\\);")
"my $ilibdir = File::Spec->catdir($dir, 'ilib');")) "my $ilibdir = File::Spec->catdir($dir, 'ilib');"))
;; Dynamic linking
(substitute* "tools/copycat/Makefile"
(("smagic-static") "lmagic"))
;; The 'configure' script doesn't recognize things like ;; The 'configure' script doesn't recognize things like
;; '--enable-fast-install'. ;; '--enable-fast-install'.
(zero? (system* (zero? (system*