gnu: Add phylip.
* gnu/packages/bioinformatics.scm (phylip): New variable.
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@ -9389,3 +9389,40 @@ novo exon-skipping events directly from raw RNA-seq data without the prior
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knowledge of gene annotation information. GESS stands for the graph-based
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knowledge of gene annotation information. GESS stands for the graph-based
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exon-skipping scanner detection scheme.")
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exon-skipping scanner detection scheme.")
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(license license:bsd-3)))
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(license license:bsd-3)))
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(define-public phylip
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(package
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(name "phylip")
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(version "3.696")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "http://evolution.gs.washington.edu/phylip/"
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"download/phylip-" version ".tar.gz"))
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(sha256
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(base32
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"01jar1rayhr2gba2pgbw49m56rc5z4p5wn3ds0m188hrlln4a2nd"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ; no check target
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#:make-flags (list "-f" "Makefile.unx" "install")
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#:parallel-build? #f ; not supported
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'enter-dir
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(lambda _ (chdir "src") #t))
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(delete 'configure)
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(replace 'install
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((target (string-append (assoc-ref outputs "out")
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"/bin")))
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(mkdir-p target)
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(for-each (lambda (file)
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(install-file file target))
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(find-files "../exe" ".*")))
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#t)))))
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(home-page "http://evolution.genetics.washington.edu/phylip/")
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(synopsis "Tools for inferring phylogenies")
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(description "PHYLIP (the PHYLogeny Inference Package) is a package of
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programs for inferring phylogenies (evolutionary trees).")
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(license license:bsd-2)))
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